Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L2-201ENST00000561772 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L6-201ENST00000626483 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L1-201ENST00000627662 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L8-201ENST00000629013 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L3-201ENST00000630187 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L7-201ENST00000630678 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 DUX4L5-201ENST00000630834 1275 ntBASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PTCHD3Q3KNS1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 AC123595.1-201ENST00000440769 1046 ntBASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTCHD3Q3KNS1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTCHD3Q3KNS1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
PTCHD3Q3KNS1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AC007375.3-201ENST00000600936 2314 ntBASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AC244015.2-201ENST00000616358 1861 ntBASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 CCDC92B-201ENST00000575506 885 ntBASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTCHD3Q3KNS1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 KRT18P5-201ENST00000436075 1291 ntBASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.75■□□□□ 0.91
PTCHD3Q3KNS1 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms