Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKDCP78527 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKDCP78527 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC15.66■□□□□ 0.1
PRKDCP78527 AC079630.1-202ENST00000618127 1840 ntBASIC15.66■□□□□ 0.1
PRKDCP78527 AL355472.2-201ENST00000422958 438 ntBASIC15.66■□□□□ 0.1
PRKDCP78527 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PRKDCP78527 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKDCP78527 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC15.66■□□□□ 0.1
PRKDCP78527 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKDCP78527 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PRKDCP78527 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC15.66■□□□□ 0.1
PRKDCP78527 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PRKDCP78527 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.66■□□□□ 0.1
PRKDCP78527 AC142086.6-201ENST00000621154 1765 ntBASIC15.65■□□□□ 0.1
PRKDCP78527 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKDCP78527 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
PRKDCP78527 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.65■□□□□ 0.1
PRKDCP78527 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.65■□□□□ 0.1
PRKDCP78527 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.65■□□□□ 0.1
PRKDCP78527 RBM42-202ENST00000586618 771 ntTSL 3 BASIC15.65■□□□□ 0.1
PRKDCP78527 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.65■□□□□ 0.1
PRKDCP78527 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC15.65■□□□□ 0.1
PRKDCP78527 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
PRKDCP78527 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.65■□□□□ 0.1
PRKDCP78527 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
PRKDCP78527 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
PRKDCP78527 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
PRKDCP78527 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC15.64■□□□□ 0.1
PRKDCP78527 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
PRKDCP78527 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC15.64■□□□□ 0.09
PRKDCP78527 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC15.64■□□□□ 0.09
PRKDCP78527 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.64■□□□□ 0.09
PRKDCP78527 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.64■□□□□ 0.09
PRKDCP78527 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
PRKDCP78527 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
PRKDCP78527 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC15.63■□□□□ 0.09
PRKDCP78527 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC15.63■□□□□ 0.09
PRKDCP78527 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 SOX15-203ENST00000570788 1093 ntBASIC15.63■□□□□ 0.09
PRKDCP78527 HLA-B-256ENST00000639848 1089 ntBASIC15.63■□□□□ 0.09
PRKDCP78527 RBM17P2-201ENST00000616397 1405 ntBASIC15.63■□□□□ 0.09
PRKDCP78527 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.63■□□□□ 0.09
PRKDCP78527 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PRKDCP78527 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.63■□□□□ 0.09
PRKDCP78527 USP45-205ENST00000472914 1617 ntTSL 5 BASIC15.63■□□□□ 0.09
PRKDCP78527 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.63■□□□□ 0.09
PRKDCP78527 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PRKDCP78527 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.63■□□□□ 0.09
PRKDCP78527 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.62■□□□□ 0.09
PRKDCP78527 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
PRKDCP78527 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
PRKDCP78527 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKDCP78527 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PRKDCP78527 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.62■□□□□ 0.09
PRKDCP78527 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKDCP78527 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKDCP78527 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
PRKDCP78527 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.62■□□□□ 0.09
PRKDCP78527 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.62■□□□□ 0.09
PRKDCP78527 AC068587.7-201ENST00000641602 218 ntBASIC15.62■□□□□ 0.09
PRKDCP78527 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PRKDCP78527 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC15.61■□□□□ 0.09
PRKDCP78527 DUSP8P3-201ENST00000399571 1760 ntBASIC15.61■□□□□ 0.09
PRKDCP78527 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PRKDCP78527 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PRKDCP78527 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKDCP78527 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.61■□□□□ 0.09
PRKDCP78527 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.61■□□□□ 0.09
PRKDCP78527 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PRKDCP78527 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PRKDCP78527 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PRKDCP78527 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.61■□□□□ 0.09
PRKDCP78527 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms