Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH2P43246 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.56■■□□□ 1.04
MSH2P43246 pRNA.6-201ENST00000610482 90 ntBASIC21.56■■□□□ 1.04
MSH2P43246 pRNA.5-201ENST00000612139 90 ntBASIC21.56■■□□□ 1.04
MSH2P43246 pRNA.11-201ENST00000618423 90 ntBASIC21.56■■□□□ 1.04
MSH2P43246 pRNA.13-201ENST00000619112 90 ntBASIC21.56■■□□□ 1.04
MSH2P43246 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH2P43246 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH2P43246 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.55■■□□□ 1.04
MSH2P43246 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH2P43246 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MSH2P43246 KRT16P3-201ENST00000439127 1283 ntBASIC21.55■■□□□ 1.04
MSH2P43246 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
MSH2P43246 MIR6724-1-201ENST00000616420 92 ntBASIC21.55■■□□□ 1.04
MSH2P43246 MIR6724-2-201ENST00000616483 92 ntBASIC21.55■■□□□ 1.04
MSH2P43246 MIR6724-4-201ENST00000617390 92 ntBASIC21.55■■□□□ 1.04
MSH2P43246 MIR6724-3-201ENST00000622482 92 ntBASIC21.55■■□□□ 1.04
MSH2P43246 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.55■■□□□ 1.04
MSH2P43246 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
MSH2P43246 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSH2P43246 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH2P43246 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH2P43246 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
MSH2P43246 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
MSH2P43246 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.54■■□□□ 1.04
MSH2P43246 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH2P43246 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH2P43246 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH2P43246 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH2P43246 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.54■■□□□ 1.04
MSH2P43246 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.54■■□□□ 1.04
MSH2P43246 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
MSH2P43246 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH2P43246 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH2P43246 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
MSH2P43246 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH2P43246 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
MSH2P43246 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH2P43246 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 AC006455.2-201ENST00000429931 906 ntBASIC21.53■■□□□ 1.04
MSH2P43246 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
MSH2P43246 AC068587.7-201ENST00000641602 218 ntBASIC21.53■■□□□ 1.04
MSH2P43246 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
MSH2P43246 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 AL157384.1-201ENST00000445995 2473 ntBASIC21.53■■□□□ 1.04
MSH2P43246 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH2P43246 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH2P43246 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.52■■□□□ 1.04
MSH2P43246 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH2P43246 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH2P43246 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
MSH2P43246 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH2P43246 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.52■■□□□ 1.04
MSH2P43246 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
MSH2P43246 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH2P43246 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH2P43246 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH2P43246 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH2P43246 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH2P43246 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH2P43246 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.51■■□□□ 1.03
MSH2P43246 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.51■■□□□ 1.03
MSH2P43246 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH2P43246 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH2P43246 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH2P43246 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH2P43246 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
MSH2P43246 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MSH2P43246 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
MSH2P43246 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH2P43246 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH2P43246 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH2P43246 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH2P43246 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH2P43246 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms