Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 DUX4L3-201ENST00000630187 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L7-201ENST00000630678 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L5-201ENST00000630834 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 BX005040.4-201ENST00000637145 1518 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.18■□□□□ 0.98
XRCC1P18887 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.17■□□□□ 0.98
XRCC1P18887 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
XRCC1P18887 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.17■□□□□ 0.98
XRCC1P18887 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.17■□□□□ 0.98
XRCC1P18887 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
XRCC1P18887 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.17■□□□□ 0.98
XRCC1P18887 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.17■□□□□ 0.98
XRCC1P18887 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
XRCC1P18887 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
XRCC1P18887 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
XRCC1P18887 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
XRCC1P18887 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.16■□□□□ 0.98
XRCC1P18887 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
XRCC1P18887 AC092666.2-201ENST00000613287 246 ntBASIC21.16■□□□□ 0.98
XRCC1P18887 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
XRCC1P18887 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.16■□□□□ 0.98
XRCC1P18887 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.16■□□□□ 0.98
XRCC1P18887 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC1P18887 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.15■□□□□ 0.98
XRCC1P18887 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
XRCC1P18887 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC1P18887 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
XRCC1P18887 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC1P18887 KRT18P14-201ENST00000534205 1250 ntBASIC21.15■□□□□ 0.98
XRCC1P18887 TPRG1LP1-201ENST00000598702 760 ntBASIC21.15■□□□□ 0.98
XRCC1P18887 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
XRCC1P18887 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
XRCC1P18887 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
XRCC1P18887 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.14■□□□□ 0.97
XRCC1P18887 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.14■□□□□ 0.97
XRCC1P18887 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.14■□□□□ 0.97
XRCC1P18887 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
XRCC1P18887 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
XRCC1P18887 AC087742.1-201ENST00000575880 1738 ntBASIC21.14■□□□□ 0.97
XRCC1P18887 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
XRCC1P18887 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.13■□□□□ 0.97
XRCC1P18887 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
XRCC1P18887 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.13■□□□□ 0.97
XRCC1P18887 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.13■□□□□ 0.97
XRCC1P18887 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.13■□□□□ 0.97
XRCC1P18887 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
XRCC1P18887 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
XRCC1P18887 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
XRCC1P18887 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.12■□□□□ 0.97
XRCC1P18887 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.12■□□□□ 0.97
XRCC1P18887 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 KRT18P5-201ENST00000436075 1291 ntBASIC21.12■□□□□ 0.97
XRCC1P18887 AC079089.2-201ENST00000531211 1277 ntBASIC21.12■□□□□ 0.97
XRCC1P18887 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.12■□□□□ 0.97
XRCC1P18887 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.12■□□□□ 0.97
XRCC1P18887 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.12■□□□□ 0.97
XRCC1P18887 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.12■□□□□ 0.97
XRCC1P18887 FAM99A-202ENST00000538190 1989 ntBASIC21.12■□□□□ 0.97
XRCC1P18887 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
XRCC1P18887 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
XRCC1P18887 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms