Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPNE3O75131 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPNE3O75131 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.35■□□□□ 0.85
CPNE3O75131 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CPNE3O75131 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.35■□□□□ 0.85
CPNE3O75131 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.35■□□□□ 0.85
CPNE3O75131 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.35■□□□□ 0.85
CPNE3O75131 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.35■□□□□ 0.85
CPNE3O75131 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 AC011767.1-201ENST00000617410 1153 ntBASIC20.35■□□□□ 0.85
CPNE3O75131 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPNE3O75131 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CPNE3O75131 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
CPNE3O75131 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CPNE3O75131 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.34■□□□□ 0.85
CPNE3O75131 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CPNE3O75131 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.34■□□□□ 0.85
CPNE3O75131 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.34■□□□□ 0.85
CPNE3O75131 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CPNE3O75131 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CPNE3O75131 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
CPNE3O75131 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPNE3O75131 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPNE3O75131 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPNE3O75131 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.33■□□□□ 0.85
CPNE3O75131 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.33■□□□□ 0.85
CPNE3O75131 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CPNE3O75131 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CPNE3O75131 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
CPNE3O75131 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.33■□□□□ 0.84
CPNE3O75131 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CPNE3O75131 LINC00526-201ENST00000581067 1875 ntBASIC20.33■□□□□ 0.84
CPNE3O75131 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.32■□□□□ 0.84
CPNE3O75131 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPNE3O75131 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CPNE3O75131 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPNE3O75131 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPNE3O75131 HLA-L-209ENST00000420110 1011 ntBASIC20.32■□□□□ 0.84
CPNE3O75131 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.32■□□□□ 0.84
CPNE3O75131 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPNE3O75131 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.32■□□□□ 0.84
CPNE3O75131 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CPNE3O75131 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CPNE3O75131 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.32■□□□□ 0.84
CPNE3O75131 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.31■□□□□ 0.84
CPNE3O75131 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 LINC00565-201ENST00000562710 2331 ntBASIC20.31■□□□□ 0.84
CPNE3O75131 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 AC006970.2-201ENST00000450065 779 ntBASIC20.31■□□□□ 0.84
CPNE3O75131 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.31■□□□□ 0.84
CPNE3O75131 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.31■□□□□ 0.84
CPNE3O75131 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 PKD1P6-201ENST00000343738 4769 ntBASIC20.31■□□□□ 0.84
CPNE3O75131 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.31■□□□□ 0.84
CPNE3O75131 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.31■□□□□ 0.84
CPNE3O75131 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CPNE3O75131 AL117328.2-201ENST00000624617 1940 ntBASIC20.31■□□□□ 0.84
CPNE3O75131 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CPNE3O75131 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.3■□□□□ 0.84
CPNE3O75131 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.3■□□□□ 0.84
CPNE3O75131 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.3■□□□□ 0.84
CPNE3O75131 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CPNE3O75131 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.3■□□□□ 0.84
CPNE3O75131 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.3■□□□□ 0.84
CPNE3O75131 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.3■□□□□ 0.84
CPNE3O75131 SLC25A24-204ENST00000569674 2357 ntBASIC20.3■□□□□ 0.84
CPNE3O75131 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CPNE3O75131 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CPNE3O75131 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CPNE3O75131 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms