Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
SMIM28A0A1B0GU29 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
SMIM28A0A1B0GU29 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 DUX4L16-201ENST00000555130 1264 ntBASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
SMIM28A0A1B0GU29 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 AC233723.2-201ENST00000623798 2106 ntBASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 SLC7A5P2-201ENST00000553010 536 ntBASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
SMIM28A0A1B0GU29 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
SMIM28A0A1B0GU29 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
SMIM28A0A1B0GU29 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SMIM28A0A1B0GU29 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.89■■□□□ 1.26
SMIM28A0A1B0GU29 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 ID1-201ENST00000376105 1233 ntBASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 CROCCP5-201ENST00000436658 830 ntBASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
SMIM28A0A1B0GU29 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 AC242852.2-201ENST00000615738 1807 ntBASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 FAM99A-202ENST00000538190 1989 ntBASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
SMIM28A0A1B0GU29 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 SLC7A5P1-201ENST00000568957 537 ntBASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMIM28A0A1B0GU29 GUSBP5-202ENST00000510805 1989 ntBASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms