Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 AC009086.3-201ENST00000623486 1008 ntBASIC19.38■□□□□ 0.69
DDX28Q9NUL7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
DDX28Q9NUL7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
DDX28Q9NUL7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 AC026310.3-201ENST00000625186 2373 ntBASIC19.36■□□□□ 0.69
DDX28Q9NUL7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DDX28Q9NUL7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 KRT16P3-201ENST00000439127 1283 ntBASIC19.35■□□□□ 0.69
DDX28Q9NUL7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
DDX28Q9NUL7 C11orf96-202ENST00000528572 1834 ntBASIC19.35■□□□□ 0.69
DDX28Q9NUL7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
DDX28Q9NUL7 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.33■□□□□ 0.69
DDX28Q9NUL7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
DDX28Q9NUL7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
DDX28Q9NUL7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DDX28Q9NUL7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.32■□□□□ 0.68
DDX28Q9NUL7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
DDX28Q9NUL7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DDX28Q9NUL7 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
DDX28Q9NUL7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms