Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LIME1Q9H400 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIME1Q9H400 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
LIME1Q9H400 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LIME1Q9H400 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.75■□□□□ 0.59
LIME1Q9H400 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.75■□□□□ 0.59
LIME1Q9H400 SMUG1P1-201ENST00000590640 811 ntBASIC18.75■□□□□ 0.59
LIME1Q9H400 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.75■□□□□ 0.59
LIME1Q9H400 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
LIME1Q9H400 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.75■□□□□ 0.59
LIME1Q9H400 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.75■□□□□ 0.59
LIME1Q9H400 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.75■□□□□ 0.59
LIME1Q9H400 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 AC127496.7-201ENST00000625110 1798 ntBASIC18.75■□□□□ 0.59
LIME1Q9H400 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.75■□□□□ 0.59
LIME1Q9H400 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LIME1Q9H400 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.74■□□□□ 0.59
LIME1Q9H400 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIME1Q9H400 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
LIME1Q9H400 KRT18P11-201ENST00000435214 1283 ntBASIC18.74■□□□□ 0.59
LIME1Q9H400 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.74■□□□□ 0.59
LIME1Q9H400 MFSD11-216ENST00000590393 1141 ntBASIC18.74■□□□□ 0.59
LIME1Q9H400 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.74■□□□□ 0.59
LIME1Q9H400 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LIME1Q9H400 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIME1Q9H400 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.74■□□□□ 0.59
LIME1Q9H400 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIME1Q9H400 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIME1Q9H400 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIME1Q9H400 AC079630.1-202ENST00000618127 1840 ntBASIC18.73■□□□□ 0.59
LIME1Q9H400 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
LIME1Q9H400 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LIME1Q9H400 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LIME1Q9H400 KRT18P6-201ENST00000555540 1265 ntBASIC18.73■□□□□ 0.59
LIME1Q9H400 MIR4651-201ENST00000582622 73 ntBASIC18.73■□□□□ 0.59
LIME1Q9H400 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIME1Q9H400 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.73■□□□□ 0.59
LIME1Q9H400 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.73■□□□□ 0.59
LIME1Q9H400 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.73■□□□□ 0.59
LIME1Q9H400 AC004687.1-201ENST00000579003 1625 ntBASIC18.72■□□□□ 0.59
LIME1Q9H400 TSPY6P-201ENST00000448518 926 ntBASIC18.72■□□□□ 0.59
LIME1Q9H400 AC079140.4-201ENST00000507448 529 ntBASIC18.72■□□□□ 0.59
LIME1Q9H400 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.72■□□□□ 0.59
LIME1Q9H400 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.72■□□□□ 0.59
LIME1Q9H400 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIME1Q9H400 AL121832.2-201ENST00000610979 668 ntBASIC18.72■□□□□ 0.59
LIME1Q9H400 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIME1Q9H400 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
LIME1Q9H400 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.72■□□□□ 0.59
LIME1Q9H400 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIME1Q9H400 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIME1Q9H400 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LIME1Q9H400 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIME1Q9H400 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIME1Q9H400 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.71■□□□□ 0.59
LIME1Q9H400 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 AC137767.1-201ENST00000602918 1920 ntBASIC18.71■□□□□ 0.59
LIME1Q9H400 AC007375.3-201ENST00000600936 2314 ntBASIC18.71■□□□□ 0.59
LIME1Q9H400 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.71■□□□□ 0.59
LIME1Q9H400 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.71■□□□□ 0.59
LIME1Q9H400 AL138781.1-201ENST00000566567 1274 ntBASIC18.71■□□□□ 0.59
LIME1Q9H400 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.71■□□□□ 0.59
LIME1Q9H400 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIME1Q9H400 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LIME1Q9H400 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
LIME1Q9H400 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIME1Q9H400 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
LIME1Q9H400 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIME1Q9H400 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.7■□□□□ 0.58
LIME1Q9H400 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIME1Q9H400 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.7■□□□□ 0.58
LIME1Q9H400 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.7■□□□□ 0.58
LIME1Q9H400 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.7■□□□□ 0.58
LIME1Q9H400 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIME1Q9H400 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIME1Q9H400 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LIME1Q9H400 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms