Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.46■□□□□ 0.71
KLHDC3Q9BQ90 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
KLHDC3Q9BQ90 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
KLHDC3Q9BQ90 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
KLHDC3Q9BQ90 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.46■□□□□ 0.71
KLHDC3Q9BQ90 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 AC007375.3-201ENST00000600936 2314 ntBASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
KLHDC3Q9BQ90 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
KLHDC3Q9BQ90 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
KLHDC3Q9BQ90 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AL034346.1-201ENST00000568244 1277 ntBASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AC009237.3-201ENST00000393279 1427 ntBASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.42■□□□□ 0.7
KLHDC3Q9BQ90 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 AC026271.2-201ENST00000428091 497 ntBASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 YBX1P1-201ENST00000445822 960 ntBASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 CCDC92B-201ENST00000575506 885 ntBASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 KRT18P61-201ENST00000585825 1298 ntBASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
KLHDC3Q9BQ90 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 AC087623.3-201ENST00000607047 1098 ntBASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
KLHDC3Q9BQ90 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.39■□□□□ 0.69
KLHDC3Q9BQ90 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
KLHDC3Q9BQ90 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms