Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC29.31■■■□□ 2.28
NPHP3Q7Z494 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
NPHP3Q7Z494 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
NPHP3Q7Z494 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC29.31■■■□□ 2.28
NPHP3Q7Z494 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
NPHP3Q7Z494 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 AC120498.10-201ENST00000621827 505 ntBASIC29.29■■■□□ 2.28
NPHP3Q7Z494 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC29.29■■■□□ 2.28
NPHP3Q7Z494 AP006587.3-201ENST00000525742 1516 ntBASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 RHOD-202ENST00000532559 538 ntTSL 3 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.28■■■□□ 2.28
NPHP3Q7Z494 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 PEX7-202ENST00000367756 680 ntTSL 3 BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
NPHP3Q7Z494 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
NPHP3Q7Z494 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 UBE2SP1-201ENST00000450587 669 ntBASIC29.26■■■□□ 2.27
NPHP3Q7Z494 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 AL591742.1-201ENST00000604433 565 ntBASIC29.26■■■□□ 2.27
NPHP3Q7Z494 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC29.26■■■□□ 2.27
NPHP3Q7Z494 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 AC008175.2-201ENST00000612840 297 ntBASIC29.25■■■□□ 2.27
NPHP3Q7Z494 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 MME-217ENST00000616757 1315 ntTSL 5 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 LINC01960-201ENST00000563759 1884 ntBASIC29.25■■■□□ 2.27
NPHP3Q7Z494 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
NPHP3Q7Z494 OR7E47P-201ENST00000546390 1422 ntBASIC29.25■■■□□ 2.27
NPHP3Q7Z494 SERPINH1P1-201ENST00000419794 1249 ntBASIC29.24■■■□□ 2.27
NPHP3Q7Z494 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 OR2A1-AS1-201ENST00000462305 773 ntBASIC29.24■■■□□ 2.27
NPHP3Q7Z494 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC29.24■■■□□ 2.27
NPHP3Q7Z494 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 FGF8-207ENST00000618991 856 ntTSL 3 BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 LINC01124-201ENST00000409786 2117 ntBASIC29.23■■■□□ 2.27
NPHP3Q7Z494 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 RBM17P2-201ENST00000616397 1405 ntBASIC29.23■■■□□ 2.27
NPHP3Q7Z494 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
NPHP3Q7Z494 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
NPHP3Q7Z494 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC29.22■■■□□ 2.27
NPHP3Q7Z494 AL359736.2-201ENST00000621992 437 ntBASIC29.22■■■□□ 2.27
NPHP3Q7Z494 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
NPHP3Q7Z494 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC29.22■■■□□ 2.27
NPHP3Q7Z494 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms