Protein–RNA interactions for Protein: Q6ZV77

C9orf139, Uncharacterized protein C9orf139, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf139Q6ZV77 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
C9orf139Q6ZV77 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 AL355802.2-201ENST00000402069 882 ntBASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 AC010536.3-201ENST00000620306 533 ntBASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
C9orf139Q6ZV77 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.23■□□□□ 0.35
C9orf139Q6ZV77 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 CNN2P6-201ENST00000439038 900 ntBASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 TSPY6P-201ENST00000448518 926 ntBASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 AC083906.2-201ENST00000511578 360 ntBASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 SLC7A5P2-201ENST00000553010 536 ntBASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC17.22■□□□□ 0.35
C9orf139Q6ZV77 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 AC068473.5-201ENST00000616428 2072 ntBASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 AC137767.1-201ENST00000602918 1920 ntBASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
C9orf139Q6ZV77 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
C9orf139Q6ZV77 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
C9orf139Q6ZV77 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AC133552.2-202ENST00000575694 574 ntBASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AC013268.1-206ENST00000638368 961 ntBASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AC112229.1-201ENST00000639295 961 ntBASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AC087742.1-201ENST00000575880 1738 ntBASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.2■□□□□ 0.34
C9orf139Q6ZV77 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms