Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 MIR939-201ENST00000401314 82 ntBASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 AF213884.3-201ENST00000563833 479 ntBASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 AL136967.2-201ENST00000623968 743 ntBASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF549Q6P9A3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 TSPY26P-201ENST00000476365 1326 ntBASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF549Q6P9A3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 Z98882.1-201ENST00000622160 2253 ntBASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 AC003102.1-202ENST00000563394 1796 ntBASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.17■□□□□ 0.98
ZNF549Q6P9A3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 SUDS3P1-201ENST00000505831 966 ntBASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 PKD1P6-201ENST00000343738 4769 ntBASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF549Q6P9A3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 RASA4CP-201ENST00000424092 1398 ntBASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 AL139246.5-201ENST00000606645 996 ntBASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF549Q6P9A3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.14■□□□□ 0.98
ZNF549Q6P9A3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF549Q6P9A3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ZNF549Q6P9A3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 AP006587.3-201ENST00000525742 1516 ntBASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
ZNF549Q6P9A3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 AC091305.1-201ENST00000479476 895 ntBASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 AC104564.3-201ENST00000582367 638 ntBASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.13■□□□□ 0.97
ZNF549Q6P9A3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms