Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
BRCA1P38398 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC26.45■■□□□ 1.83
BRCA1P38398 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
BRCA1P38398 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.45■■□□□ 1.82
BRCA1P38398 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC26.45■■□□□ 1.82
BRCA1P38398 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
BRCA1P38398 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC26.45■■□□□ 1.82
BRCA1P38398 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC26.45■■□□□ 1.82
BRCA1P38398 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
BRCA1P38398 RBM17P2-201ENST00000616397 1405 ntBASIC26.44■■□□□ 1.82
BRCA1P38398 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
BRCA1P38398 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.44■■□□□ 1.82
BRCA1P38398 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.44■■□□□ 1.82
BRCA1P38398 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
BRCA1P38398 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.44■■□□□ 1.82
BRCA1P38398 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC26.44■■□□□ 1.82
BRCA1P38398 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC26.44■■□□□ 1.82
BRCA1P38398 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
BRCA1P38398 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
BRCA1P38398 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
BRCA1P38398 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC26.43■■□□□ 1.82
BRCA1P38398 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
BRCA1P38398 AC053503.5-201ENST00000601508 636 ntBASIC26.43■■□□□ 1.82
BRCA1P38398 FAM197Y4-202ENST00000622692 608 ntBASIC26.43■■□□□ 1.82
BRCA1P38398 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
BRCA1P38398 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.43■■□□□ 1.82
BRCA1P38398 AC138932.3-201ENST00000567634 1902 ntBASIC26.43■■□□□ 1.82
BRCA1P38398 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
BRCA1P38398 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
BRCA1P38398 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC26.42■■□□□ 1.82
BRCA1P38398 FAM210CP-201ENST00000445714 574 ntBASIC26.42■■□□□ 1.82
BRCA1P38398 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.42■■□□□ 1.82
BRCA1P38398 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC26.42■■□□□ 1.82
BRCA1P38398 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC26.42■■□□□ 1.82
BRCA1P38398 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
BRCA1P38398 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
BRCA1P38398 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
BRCA1P38398 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC26.42■■□□□ 1.82
BRCA1P38398 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC26.42■■□□□ 1.82
BRCA1P38398 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.42■■□□□ 1.82
BRCA1P38398 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.42■■□□□ 1.82
BRCA1P38398 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC26.42■■□□□ 1.82
BRCA1P38398 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.42■■□□□ 1.82
BRCA1P38398 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
BRCA1P38398 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
BRCA1P38398 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
BRCA1P38398 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
BRCA1P38398 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
BRCA1P38398 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.41■■□□□ 1.82
BRCA1P38398 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
BRCA1P38398 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.41■■□□□ 1.82
BRCA1P38398 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
BRCA1P38398 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC26.4■■□□□ 1.82
BRCA1P38398 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
BRCA1P38398 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.4■■□□□ 1.82
BRCA1P38398 MIR718-201ENST00000390190 70 ntBASIC26.4■■□□□ 1.82
BRCA1P38398 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
BRCA1P38398 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
BRCA1P38398 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.39■■□□□ 1.82
BRCA1P38398 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
BRCA1P38398 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
BRCA1P38398 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.39■■□□□ 1.81
BRCA1P38398 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC26.39■■□□□ 1.81
BRCA1P38398 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC26.38■■□□□ 1.81
BRCA1P38398 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BRCA1P38398 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.38■■□□□ 1.81
BRCA1P38398 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BRCA1P38398 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BRCA1P38398 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
BRCA1P38398 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRCA1P38398 LINC01960-201ENST00000563759 1884 ntBASIC26.37■■□□□ 1.81
BRCA1P38398 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.37■■□□□ 1.81
BRCA1P38398 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRCA1P38398 C1QBPP2-201ENST00000528754 825 ntBASIC26.37■■□□□ 1.81
BRCA1P38398 AC079089.2-201ENST00000531211 1277 ntBASIC26.37■■□□□ 1.81
BRCA1P38398 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC26.37■■□□□ 1.81
BRCA1P38398 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.37■■□□□ 1.81
BRCA1P38398 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
BRCA1P38398 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
BRCA1P38398 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.37■■□□□ 1.81
BRCA1P38398 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.36■■□□□ 1.81
BRCA1P38398 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BRCA1P38398 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.36■■□□□ 1.81
BRCA1P38398 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.36■■□□□ 1.81
BRCA1P38398 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
BRCA1P38398 RPPH1-201ENST00000516869 333 ntBASIC26.36■■□□□ 1.81
BRCA1P38398 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC26.36■■□□□ 1.81
BRCA1P38398 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
BRCA1P38398 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
BRCA1P38398 AC069544.1-201ENST00000609399 999 ntBASIC26.36■■□□□ 1.81
BRCA1P38398 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.36■■□□□ 1.81
BRCA1P38398 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BRCA1P38398 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms