Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.87■□□□□ 0.93
SHMT2P34897 AP004607.7-201ENST00000527152 1677 ntBASIC20.86■□□□□ 0.93
SHMT2P34897 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SHMT2P34897 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.86■□□□□ 0.93
SHMT2P34897 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.86■□□□□ 0.93
SHMT2P34897 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.86■□□□□ 0.93
SHMT2P34897 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.86■□□□□ 0.93
SHMT2P34897 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SHMT2P34897 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 AC242852.2-201ENST00000615738 1807 ntBASIC20.85■□□□□ 0.93
SHMT2P34897 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.85■□□□□ 0.93
SHMT2P34897 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SHMT2P34897 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SHMT2P34897 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 AC034268.1-201ENST00000441047 882 ntBASIC20.85■□□□□ 0.93
SHMT2P34897 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 TERF1P2-201ENST00000583350 1212 ntBASIC20.85■□□□□ 0.93
SHMT2P34897 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SHMT2P34897 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHMT2P34897 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.84■□□□□ 0.93
SHMT2P34897 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHMT2P34897 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHMT2P34897 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SHMT2P34897 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHMT2P34897 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHMT2P34897 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.84■□□□□ 0.93
SHMT2P34897 CCDC92B-201ENST00000575506 885 ntBASIC20.84■□□□□ 0.93
SHMT2P34897 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.84■□□□□ 0.93
SHMT2P34897 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.84■□□□□ 0.93
SHMT2P34897 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.84■□□□□ 0.93
SHMT2P34897 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.84■□□□□ 0.93
SHMT2P34897 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.84■□□□□ 0.93
SHMT2P34897 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHMT2P34897 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHMT2P34897 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.84■□□□□ 0.93
SHMT2P34897 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SHMT2P34897 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.83■□□□□ 0.93
SHMT2P34897 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.83■□□□□ 0.93
SHMT2P34897 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHMT2P34897 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SHMT2P34897 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SHMT2P34897 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHMT2P34897 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
SHMT2P34897 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHMT2P34897 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
SHMT2P34897 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SHMT2P34897 KRT18P14-201ENST00000534205 1250 ntBASIC20.83■□□□□ 0.93
SHMT2P34897 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.83■□□□□ 0.93
SHMT2P34897 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
SHMT2P34897 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.83■□□□□ 0.92
SHMT2P34897 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHMT2P34897 AC005224.4-201ENST00000583262 1652 ntBASIC20.83■□□□□ 0.92
SHMT2P34897 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHMT2P34897 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHMT2P34897 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHMT2P34897 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.82■□□□□ 0.92
SHMT2P34897 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.82■□□□□ 0.92
SHMT2P34897 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.82■□□□□ 0.92
SHMT2P34897 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.82■□□□□ 0.92
SHMT2P34897 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.82■□□□□ 0.92
SHMT2P34897 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.82■□□□□ 0.92
SHMT2P34897 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.81■□□□□ 0.92
SHMT2P34897 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 AC080038.3-201ENST00000623346 1952 ntBASIC20.81■□□□□ 0.92
SHMT2P34897 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
SHMT2P34897 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.81■□□□□ 0.92
SHMT2P34897 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.81■□□□□ 0.92
SHMT2P34897 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.81■□□□□ 0.92
SHMT2P34897 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.81■□□□□ 0.92
SHMT2P34897 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.81■□□□□ 0.92
SHMT2P34897 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHMT2P34897 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms