Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.24■□□□□ 0.99
XRCC1P18887 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
XRCC1P18887 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.24■□□□□ 0.99
XRCC1P18887 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
XRCC1P18887 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 AC026310.3-201ENST00000625186 2373 ntBASIC21.24■□□□□ 0.99
XRCC1P18887 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
XRCC1P18887 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
XRCC1P18887 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.23■□□□□ 0.99
XRCC1P18887 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
XRCC1P18887 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
XRCC1P18887 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.23■□□□□ 0.99
XRCC1P18887 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.23■□□□□ 0.99
XRCC1P18887 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.23■□□□□ 0.99
XRCC1P18887 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
XRCC1P18887 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
XRCC1P18887 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.22■□□□□ 0.99
XRCC1P18887 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.22■□□□□ 0.99
XRCC1P18887 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.22■□□□□ 0.99
XRCC1P18887 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.22■□□□□ 0.99
XRCC1P18887 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
XRCC1P18887 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
XRCC1P18887 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
XRCC1P18887 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
XRCC1P18887 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC1P18887 AL162430.1-201ENST00000480705 870 ntBASIC21.21■□□□□ 0.99
XRCC1P18887 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC1P18887 LINC02228-203ENST00000641970 1355 ntBASIC21.21■□□□□ 0.99
XRCC1P18887 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC1P18887 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC1P18887 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
XRCC1P18887 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.99
XRCC1P18887 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.2■□□□□ 0.98
XRCC1P18887 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
XRCC1P18887 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.2■□□□□ 0.98
XRCC1P18887 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 AC104564.3-201ENST00000582367 638 ntBASIC21.2■□□□□ 0.98
XRCC1P18887 SMUG1P1-201ENST00000590640 811 ntBASIC21.2■□□□□ 0.98
XRCC1P18887 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
XRCC1P18887 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.2■□□□□ 0.98
XRCC1P18887 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
XRCC1P18887 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.2■□□□□ 0.98
XRCC1P18887 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
XRCC1P18887 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
XRCC1P18887 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
XRCC1P18887 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
XRCC1P18887 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.19■□□□□ 0.98
XRCC1P18887 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.19■□□□□ 0.98
XRCC1P18887 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
XRCC1P18887 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.19■□□□□ 0.98
XRCC1P18887 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.19■□□□□ 0.98
XRCC1P18887 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.19■□□□□ 0.98
XRCC1P18887 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.19■□□□□ 0.98
XRCC1P18887 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
XRCC1P18887 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
XRCC1P18887 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 LINC01960-201ENST00000563759 1884 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.18■□□□□ 0.98
XRCC1P18887 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
XRCC1P18887 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L2-201ENST00000561772 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 CCDC92B-201ENST00000575506 885 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 TERF1P2-201ENST00000583350 1212 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
XRCC1P18887 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L6-201ENST00000626483 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L1-201ENST00000627662 1275 ntBASIC21.18■□□□□ 0.98
XRCC1P18887 DUX4L8-201ENST00000629013 1275 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms