Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PRKNO60260 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PRKNO60260 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PRKNO60260 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PRKNO60260 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PRKNO60260 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PRKNO60260 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.89■□□□□ 0.77
PRKNO60260 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.89■□□□□ 0.77
PRKNO60260 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.89■□□□□ 0.77
PRKNO60260 AC055733.4-201ENST00000638462 1354 ntBASIC19.89■□□□□ 0.77
PRKNO60260 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.89■□□□□ 0.77
PRKNO60260 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.89■□□□□ 0.77
PRKNO60260 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PRKNO60260 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.88■□□□□ 0.77
PRKNO60260 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
PRKNO60260 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.88■□□□□ 0.77
PRKNO60260 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.88■□□□□ 0.77
PRKNO60260 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
PRKNO60260 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PRKNO60260 AC092053.2-201ENST00000640557 1818 ntBASIC19.88■□□□□ 0.77
PRKNO60260 ECEL1P1-201ENST00000373592 1742 ntBASIC19.88■□□□□ 0.77
PRKNO60260 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.87■□□□□ 0.77
PRKNO60260 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PRKNO60260 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
PRKNO60260 AC004854.2-201ENST00000608450 1441 ntBASIC19.87■□□□□ 0.77
PRKNO60260 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.87■□□□□ 0.77
PRKNO60260 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
PRKNO60260 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.87■□□□□ 0.77
PRKNO60260 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.87■□□□□ 0.77
PRKNO60260 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.87■□□□□ 0.77
PRKNO60260 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PRKNO60260 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 AP004607.4-201ENST00000530158 1459 ntBASIC19.86■□□□□ 0.77
PRKNO60260 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKNO60260 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.86■□□□□ 0.77
PRKNO60260 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
PRKNO60260 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKNO60260 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 AC079140.4-201ENST00000507448 529 ntBASIC19.86■□□□□ 0.77
PRKNO60260 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.86■□□□□ 0.77
PRKNO60260 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.86■□□□□ 0.77
PRKNO60260 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKNO60260 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKNO60260 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 FAM99A-202ENST00000538190 1989 ntBASIC19.86■□□□□ 0.77
PRKNO60260 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PRKNO60260 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.86■□□□□ 0.77
PRKNO60260 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.85■□□□□ 0.77
PRKNO60260 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PRKNO60260 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PRKNO60260 AC022517.1-201ENST00000592429 346 ntBASIC19.85■□□□□ 0.77
PRKNO60260 IKBKGP1-201ENST00000612193 1073 ntBASIC19.85■□□□□ 0.77
PRKNO60260 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PRKNO60260 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.85■□□□□ 0.77
PRKNO60260 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PRKNO60260 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.84■□□□□ 0.77
PRKNO60260 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.84■□□□□ 0.77
PRKNO60260 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.84■□□□□ 0.77
PRKNO60260 AP006587.3-201ENST00000525742 1516 ntBASIC19.84■□□□□ 0.77
PRKNO60260 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
PRKNO60260 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKNO60260 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PRKNO60260 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PRKNO60260 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
PRKNO60260 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PRKNO60260 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PRKNO60260 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PRKNO60260 AC010542.4-201ENST00000563151 1910 ntBASIC19.83■□□□□ 0.77
PRKNO60260 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms