Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 AC055733.4-201ENST00000638462 1354 ntBASIC19.43■□□□□ 0.7
SHANK1Q9Y566 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 AC010141.2-201ENST00000452426 721 ntBASIC19.43■□□□□ 0.7
SHANK1Q9Y566 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 KRT18P20-201ENST00000548986 1279 ntBASIC19.43■□□□□ 0.7
SHANK1Q9Y566 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHANK1Q9Y566 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 OXCT2P1-201ENST00000447263 1535 ntBASIC19.42■□□□□ 0.7
SHANK1Q9Y566 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.42■□□□□ 0.7
SHANK1Q9Y566 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SHANK1Q9Y566 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 AC068473.5-201ENST00000616428 2072 ntBASIC19.41■□□□□ 0.7
SHANK1Q9Y566 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHANK1Q9Y566 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.4■□□□□ 0.7
SHANK1Q9Y566 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SHANK1Q9Y566 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK1Q9Y566 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.7
SHANK1Q9Y566 GCSHP5-201ENST00000443090 522 ntBASIC19.39■□□□□ 0.69
SHANK1Q9Y566 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 AL353803.4-201ENST00000565882 1934 ntBASIC19.39■□□□□ 0.69
SHANK1Q9Y566 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK1Q9Y566 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 DUSP8P5-201ENST00000422884 1815 ntBASIC19.38■□□□□ 0.69
SHANK1Q9Y566 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 MIR4758-201ENST00000577688 71 ntBASIC19.38■□□□□ 0.69
SHANK1Q9Y566 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK1Q9Y566 AC012676.1-201ENST00000574705 1949 ntBASIC19.37■□□□□ 0.69
SHANK1Q9Y566 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 KRT18P29-201ENST00000397031 1267 ntBASIC19.37■□□□□ 0.69
SHANK1Q9Y566 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK1Q9Y566 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms