Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 EDA-201ENST00000338901 1233 ntBASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 AC027682.1-201ENST00000562846 899 ntBASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.73■■□□□ 1.07
LRRC40Q9H9A6 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 AC026310.3-201ENST00000625186 2373 ntBASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 AC110285.6-201ENST00000617652 491 ntBASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC40Q9H9A6 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 AC099791.1-201ENST00000416440 715 ntBASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 AC104564.3-201ENST00000582367 638 ntBASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC40Q9H9A6 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
LRRC40Q9H9A6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 AL137060.1-201ENST00000618151 2648 ntBASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 SMUG1P1-201ENST00000590640 811 ntBASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
LRRC40Q9H9A6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 AP001330.3-201ENST00000520123 633 ntBASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC40Q9H9A6 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 AL355001.2-201ENST00000620617 1191 ntBASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRC40Q9H9A6 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC40Q9H9A6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRC40Q9H9A6 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms