Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CDT1Q9H211 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.28■■□□□ 1.32
CDT1Q9H211 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.28■■□□□ 1.32
CDT1Q9H211 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC23.28■■□□□ 1.32
CDT1Q9H211 KRT19P1-201ENST00000405746 1186 ntBASIC23.28■■□□□ 1.32
CDT1Q9H211 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CDT1Q9H211 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.28■■□□□ 1.32
CDT1Q9H211 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.28■■□□□ 1.32
CDT1Q9H211 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 AC104187.1-201ENST00000607510 612 ntBASIC23.28■■□□□ 1.32
CDT1Q9H211 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDT1Q9H211 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC23.27■■□□□ 1.32
CDT1Q9H211 GUSBP5-202ENST00000510805 1989 ntBASIC23.27■■□□□ 1.32
CDT1Q9H211 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
CDT1Q9H211 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.27■■□□□ 1.32
CDT1Q9H211 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.27■■□□□ 1.32
CDT1Q9H211 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.27■■□□□ 1.32
CDT1Q9H211 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CDT1Q9H211 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.26■■□□□ 1.31
CDT1Q9H211 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.26■■□□□ 1.31
CDT1Q9H211 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.26■■□□□ 1.31
CDT1Q9H211 AL137784.2-201ENST00000607332 1000 ntBASIC23.26■■□□□ 1.31
CDT1Q9H211 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.26■■□□□ 1.31
CDT1Q9H211 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CDT1Q9H211 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.25■■□□□ 1.31
CDT1Q9H211 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CDT1Q9H211 AC242852.2-201ENST00000615738 1807 ntBASIC23.25■■□□□ 1.31
CDT1Q9H211 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.25■■□□□ 1.31
CDT1Q9H211 AC137761.2-201ENST00000561729 223 ntBASIC23.25■■□□□ 1.31
CDT1Q9H211 AC145350.3-201ENST00000569033 163 ntBASIC23.25■■□□□ 1.31
CDT1Q9H211 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
CDT1Q9H211 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.25■■□□□ 1.31
CDT1Q9H211 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CDT1Q9H211 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
CDT1Q9H211 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CDT1Q9H211 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDT1Q9H211 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDT1Q9H211 AC006015.1-201ENST00000429970 570 ntBASIC23.24■■□□□ 1.31
CDT1Q9H211 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
CDT1Q9H211 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.24■■□□□ 1.31
CDT1Q9H211 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDT1Q9H211 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CDT1Q9H211 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CDT1Q9H211 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.23■■□□□ 1.31
CDT1Q9H211 AC004911.1-201ENST00000416316 871 ntBASIC23.23■■□□□ 1.31
CDT1Q9H211 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.23■■□□□ 1.31
CDT1Q9H211 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.23■■□□□ 1.31
CDT1Q9H211 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
CDT1Q9H211 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.23■■□□□ 1.31
CDT1Q9H211 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CDT1Q9H211 AC026471.6-201ENST00000622954 1905 ntBASIC23.22■■□□□ 1.31
CDT1Q9H211 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDT1Q9H211 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDT1Q9H211 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.22■■□□□ 1.31
CDT1Q9H211 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.22■■□□□ 1.31
CDT1Q9H211 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.22■■□□□ 1.31
CDT1Q9H211 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CDT1Q9H211 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CDT1Q9H211 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.22■■□□□ 1.31
CDT1Q9H211 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CDT1Q9H211 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms