Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 OR7E47P-201ENST00000546390 1422 ntBASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC28BQ9BUN5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 AL157384.1-201ENST00000445995 2473 ntBASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 AL033527.3-201ENST00000566366 1196 ntBASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 OXCT2P1-201ENST00000447263 1535 ntBASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC28BQ9BUN5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CCDC28BQ9BUN5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC28BQ9BUN5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC28BQ9BUN5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 MTDHP2-201ENST00000601468 714 ntBASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC28BQ9BUN5 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC28BQ9BUN5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC28BQ9BUN5 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms