Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
USP53Q70EK8 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 AC133561.1-201ENST00000568600 2415 ntBASIC20.74■□□□□ 0.91
USP53Q70EK8 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 CROCCP5-201ENST00000436658 830 ntBASIC20.74■□□□□ 0.91
USP53Q70EK8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.74■□□□□ 0.91
USP53Q70EK8 OR7E47P-201ENST00000546390 1422 ntBASIC20.74■□□□□ 0.91
USP53Q70EK8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
USP53Q70EK8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.74■□□□□ 0.91
USP53Q70EK8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 AC104771.1-201ENST00000603335 964 ntBASIC20.74■□□□□ 0.91
USP53Q70EK8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
USP53Q70EK8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP53Q70EK8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP53Q70EK8 AC055733.4-201ENST00000638462 1354 ntBASIC20.73■□□□□ 0.91
USP53Q70EK8 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.73■□□□□ 0.91
USP53Q70EK8 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.73■□□□□ 0.91
USP53Q70EK8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 ABHD17AP1-201ENST00000358206 933 ntBASIC20.73■□□□□ 0.91
USP53Q70EK8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.73■□□□□ 0.91
USP53Q70EK8 AL355802.2-201ENST00000402069 882 ntBASIC20.73■□□□□ 0.91
USP53Q70EK8 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.73■□□□□ 0.91
USP53Q70EK8 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.73■□□□□ 0.91
USP53Q70EK8 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.73■□□□□ 0.91
USP53Q70EK8 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.73■□□□□ 0.91
USP53Q70EK8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.73■□□□□ 0.91
USP53Q70EK8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP53Q70EK8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.73■□□□□ 0.91
USP53Q70EK8 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.72■□□□□ 0.91
USP53Q70EK8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.72■□□□□ 0.91
USP53Q70EK8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.72■□□□□ 0.91
USP53Q70EK8 AL109923.1-201ENST00000618799 583 ntBASIC20.72■□□□□ 0.91
USP53Q70EK8 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.72■□□□□ 0.91
USP53Q70EK8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.72■□□□□ 0.91
USP53Q70EK8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.72■□□□□ 0.91
USP53Q70EK8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.72■□□□□ 0.91
USP53Q70EK8 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.72■□□□□ 0.91
USP53Q70EK8 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP53Q70EK8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
USP53Q70EK8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP53Q70EK8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
USP53Q70EK8 LINC00526-201ENST00000581067 1875 ntBASIC20.71■□□□□ 0.91
USP53Q70EK8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP53Q70EK8 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP53Q70EK8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP53Q70EK8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP53Q70EK8 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.71■□□□□ 0.91
USP53Q70EK8 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.71■□□□□ 0.91
USP53Q70EK8 AP001160.3-201ENST00000601484 763 ntBASIC20.71■□□□□ 0.91
USP53Q70EK8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.71■□□□□ 0.91
USP53Q70EK8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP53Q70EK8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.7■□□□□ 0.91
USP53Q70EK8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP53Q70EK8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP53Q70EK8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.7■□□□□ 0.9
USP53Q70EK8 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.7■□□□□ 0.9
USP53Q70EK8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
USP53Q70EK8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.7■□□□□ 0.9
USP53Q70EK8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.7■□□□□ 0.9
USP53Q70EK8 MFSD11-216ENST00000590393 1141 ntBASIC20.7■□□□□ 0.9
USP53Q70EK8 TMEM191A-211ENST00000637163 1067 ntBASIC20.7■□□□□ 0.9
USP53Q70EK8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP53Q70EK8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
USP53Q70EK8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.69■□□□□ 0.9
USP53Q70EK8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.69■□□□□ 0.9
USP53Q70EK8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.69■□□□□ 0.9
USP53Q70EK8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 UBE2DNL-204ENST00000602536 740 ntBASIC20.69■□□□□ 0.9
USP53Q70EK8 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.69■□□□□ 0.9
USP53Q70EK8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.69■□□□□ 0.9
USP53Q70EK8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP53Q70EK8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP53Q70EK8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.68■□□□□ 0.9
USP53Q70EK8 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms