Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.81■■□□□ 1.56
KRT40Q6A162 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.81■■□□□ 1.56
KRT40Q6A162 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
KRT40Q6A162 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.81■■□□□ 1.56
KRT40Q6A162 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.8■■□□□ 1.56
KRT40Q6A162 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.8■■□□□ 1.56
KRT40Q6A162 SMUG1P1-201ENST00000590640 811 ntBASIC24.8■■□□□ 1.56
KRT40Q6A162 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.8■■□□□ 1.56
KRT40Q6A162 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC24.8■■□□□ 1.56
KRT40Q6A162 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
KRT40Q6A162 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.8■■□□□ 1.56
KRT40Q6A162 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
KRT40Q6A162 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
KRT40Q6A162 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.79■■□□□ 1.56
KRT40Q6A162 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
KRT40Q6A162 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC24.79■■□□□ 1.56
KRT40Q6A162 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.79■■□□□ 1.56
KRT40Q6A162 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.79■■□□□ 1.56
KRT40Q6A162 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC24.79■■□□□ 1.56
KRT40Q6A162 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC24.79■■□□□ 1.56
KRT40Q6A162 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.79■■□□□ 1.56
KRT40Q6A162 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
KRT40Q6A162 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC24.79■■□□□ 1.56
KRT40Q6A162 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.78■■□□□ 1.56
KRT40Q6A162 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.78■■□□□ 1.56
KRT40Q6A162 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.78■■□□□ 1.56
KRT40Q6A162 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
KRT40Q6A162 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 AP004607.7-201ENST00000527152 1677 ntBASIC24.78■■□□□ 1.56
KRT40Q6A162 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
KRT40Q6A162 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.78■■□□□ 1.56
KRT40Q6A162 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
KRT40Q6A162 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.77■■□□□ 1.56
KRT40Q6A162 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC24.77■■□□□ 1.56
KRT40Q6A162 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
KRT40Q6A162 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.77■■□□□ 1.56
KRT40Q6A162 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.77■■□□□ 1.56
KRT40Q6A162 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.77■■□□□ 1.56
KRT40Q6A162 AL137784.2-201ENST00000607332 1000 ntBASIC24.77■■□□□ 1.56
KRT40Q6A162 AC092437.1-201ENST00000624794 1048 ntBASIC24.77■■□□□ 1.56
KRT40Q6A162 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 TSPY26P-201ENST00000476365 1326 ntBASIC24.77■■□□□ 1.56
KRT40Q6A162 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.77■■□□□ 1.56
KRT40Q6A162 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
KRT40Q6A162 AC007375.3-201ENST00000600936 2314 ntBASIC24.77■■□□□ 1.56
KRT40Q6A162 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.76■■□□□ 1.55
KRT40Q6A162 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.76■■□□□ 1.55
KRT40Q6A162 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
KRT40Q6A162 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
KRT40Q6A162 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC24.76■■□□□ 1.55
KRT40Q6A162 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.76■■□□□ 1.55
KRT40Q6A162 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC24.76■■□□□ 1.55
KRT40Q6A162 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
KRT40Q6A162 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
KRT40Q6A162 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.75■■□□□ 1.55
KRT40Q6A162 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
KRT40Q6A162 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
KRT40Q6A162 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
KRT40Q6A162 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms