Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.84■□□□□ 0.77
RNF4P78317 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
RNF4P78317 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.84■□□□□ 0.77
RNF4P78317 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF4P78317 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF4P78317 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF4P78317 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF4P78317 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF4P78317 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.83■□□□□ 0.77
RNF4P78317 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.83■□□□□ 0.77
RNF4P78317 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.83■□□□□ 0.77
RNF4P78317 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
RNF4P78317 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.83■□□□□ 0.77
RNF4P78317 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.83■□□□□ 0.77
RNF4P78317 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
RNF4P78317 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.83■□□□□ 0.76
RNF4P78317 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF4P78317 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.82■□□□□ 0.76
RNF4P78317 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF4P78317 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RNF4P78317 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF4P78317 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF4P78317 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF4P78317 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.81■□□□□ 0.76
RNF4P78317 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF4P78317 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF4P78317 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF4P78317 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF4P78317 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
RNF4P78317 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.81■□□□□ 0.76
RNF4P78317 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.81■□□□□ 0.76
RNF4P78317 AC104564.3-201ENST00000582367 638 ntBASIC19.81■□□□□ 0.76
RNF4P78317 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF4P78317 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF4P78317 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNF4P78317 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF4P78317 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
RNF4P78317 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.8■□□□□ 0.76
RNF4P78317 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.8■□□□□ 0.76
RNF4P78317 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF4P78317 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF4P78317 AP004607.4-201ENST00000530158 1459 ntBASIC19.79■□□□□ 0.76
RNF4P78317 AC004854.2-201ENST00000608450 1441 ntBASIC19.79■□□□□ 0.76
RNF4P78317 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
RNF4P78317 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
RNF4P78317 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
RNF4P78317 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.79■□□□□ 0.76
RNF4P78317 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.79■□□□□ 0.76
RNF4P78317 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.79■□□□□ 0.76
RNF4P78317 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.79■□□□□ 0.76
RNF4P78317 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.79■□□□□ 0.76
RNF4P78317 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.79■□□□□ 0.76
RNF4P78317 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.79■□□□□ 0.76
RNF4P78317 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
RNF4P78317 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 KRT87P-202ENST00000534226 1464 ntBASIC19.79■□□□□ 0.76
RNF4P78317 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNF4P78317 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
RNF4P78317 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
RNF4P78317 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNF4P78317 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.77■□□□□ 0.76
RNF4P78317 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
RNF4P78317 ECEL1P1-201ENST00000373592 1742 ntBASIC19.77■□□□□ 0.76
RNF4P78317 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms