Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CLRN1P58418 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLRN1P58418 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.12■□□□□ 0.65
CLRN1P58418 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.11■□□□□ 0.65
CLRN1P58418 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 AP001330.3-201ENST00000520123 633 ntBASIC19.11■□□□□ 0.65
CLRN1P58418 AL139246.5-201ENST00000606645 996 ntBASIC19.11■□□□□ 0.65
CLRN1P58418 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.11■□□□□ 0.65
CLRN1P58418 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CLRN1P58418 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.1■□□□□ 0.65
CLRN1P58418 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CLRN1P58418 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.1■□□□□ 0.65
CLRN1P58418 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.1■□□□□ 0.65
CLRN1P58418 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.1■□□□□ 0.65
CLRN1P58418 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.1■□□□□ 0.65
CLRN1P58418 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 AP004607.7-201ENST00000527152 1677 ntBASIC19.1■□□□□ 0.65
CLRN1P58418 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CLRN1P58418 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CLRN1P58418 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CLRN1P58418 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.09■□□□□ 0.65
CLRN1P58418 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
CLRN1P58418 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CLRN1P58418 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.09■□□□□ 0.65
CLRN1P58418 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 AF213884.3-201ENST00000563833 479 ntBASIC19.09■□□□□ 0.65
CLRN1P58418 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.09■□□□□ 0.65
CLRN1P58418 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.09■□□□□ 0.65
CLRN1P58418 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.09■□□□□ 0.65
CLRN1P58418 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLRN1P58418 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLRN1P58418 AC010542.4-201ENST00000563151 1910 ntBASIC19.08■□□□□ 0.65
CLRN1P58418 TSPY26P-201ENST00000476365 1326 ntBASIC19.08■□□□□ 0.65
CLRN1P58418 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CLRN1P58418 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN1P58418 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN1P58418 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.08■□□□□ 0.64
CLRN1P58418 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.08■□□□□ 0.64
CLRN1P58418 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CLRN1P58418 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN1P58418 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.08■□□□□ 0.64
CLRN1P58418 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLRN1P58418 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.08■□□□□ 0.64
CLRN1P58418 RASA4CP-201ENST00000424092 1398 ntBASIC19.07■□□□□ 0.64
CLRN1P58418 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.07■□□□□ 0.64
CLRN1P58418 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.07■□□□□ 0.64
CLRN1P58418 AC091305.1-201ENST00000479476 895 ntBASIC19.07■□□□□ 0.64
CLRN1P58418 AC133561.4-201ENST00000566112 224 ntBASIC19.07■□□□□ 0.64
CLRN1P58418 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.07■□□□□ 0.64
CLRN1P58418 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CLRN1P58418 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLRN1P58418 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.07■□□□□ 0.64
CLRN1P58418 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.07■□□□□ 0.64
CLRN1P58418 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CLRN1P58418 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.06■□□□□ 0.64
CLRN1P58418 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN1P58418 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN1P58418 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN1P58418 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.06■□□□□ 0.64
CLRN1P58418 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.06■□□□□ 0.64
CLRN1P58418 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.06■□□□□ 0.64
CLRN1P58418 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLRN1P58418 MIR939-201ENST00000401314 82 ntBASIC19.06■□□□□ 0.64
CLRN1P58418 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.06■□□□□ 0.64
CLRN1P58418 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.06■□□□□ 0.64
CLRN1P58418 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CLRN1P58418 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.06■□□□□ 0.64
CLRN1P58418 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLRN1P58418 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CLRN1P58418 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.06■□□□□ 0.64
CLRN1P58418 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms