Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 COX2Q0250 756 nt3.82□□□□□ -1.8
UPF3P48412 GLG2YJL137C 1143 nt3.82□□□□□ -1.8
UPF3P48412 YLR365WYLR365W 333 nt3.82□□□□□ -1.8
UPF3P48412 YMR099CYMR099C 894 nt3.82□□□□□ -1.8
UPF3P48412 YBL062WYBL062W 381 nt3.82□□□□□ -1.8
UPF3P48412 SLX1YBR228W 915 nt3.82□□□□□ -1.8
UPF3P48412 SRO7YPR032W 3102 nt3.82□□□□□ -1.8
UPF3P48412 PIM1YBL022C 3402 nt3.82□□□□□ -1.8
UPF3P48412 YGR237CYGR237C 2358 nt3.81□□□□□ -1.8
UPF3P48412 ENT5YDR153C 1236 nt3.81□□□□□ -1.8
UPF3P48412 YER076CYER076C 909 nt3.81□□□□□ -1.8
UPF3P48412 SWD2YKL018W 990 nt3.81□□□□□ -1.8
UPF3P48412 IES3YLR052W 753 nt3.81□□□□□ -1.8
UPF3P48412 DIA1YMR316W 1011 nt3.81□□□□□ -1.8
UPF3P48412 RAS1YOR101W 930 nt3.81□□□□□ -1.8
UPF3P48412 TYE7YOR344C 876 nt3.81□□□□□ -1.8
UPF3P48412 MTL1YGR023W 1656 nt3.81□□□□□ -1.8
UPF3P48412 YDR320W-BYDR320W-B 138 nt3.8□□□□□ -1.8
UPF3P48412 MPS2YGL075C 1164 nt3.8□□□□□ -1.8
UPF3P48412 tL(UAG)JtL(UAG)J 82 nt3.8□□□□□ -1.8
UPF3P48412 tL(UAG)L1tL(UAG)L1 82 nt3.8□□□□□ -1.8
UPF3P48412 tL(UAG)L2tL(UAG)L2 82 nt3.8□□□□□ -1.8
UPF3P48412 PXR1YGR280C 816 nt3.8□□□□□ -1.8
UPF3P48412 POL32YJR043C 1053 nt3.8□□□□□ -1.8
UPF3P48412 REH1YLR387C 1299 nt3.8□□□□□ -1.8
UPF3P48412 CSM3YMR048W 954 nt3.8□□□□□ -1.8
UPF3P48412 YNL181WYNL181W 1224 nt3.8□□□□□ -1.8
UPF3P48412 YNL226WYNL226W 411 nt3.8□□□□□ -1.8
UPF3P48412 UTP23YOR004W 765 nt3.8□□□□□ -1.8
UPF3P48412 SEC15YGL233W 2733 nt3.8□□□□□ -1.8
UPF3P48412 ART10YLR392C 1557 nt3.8□□□□□ -1.8
UPF3P48412 ITT1YML068W 1395 nt3.79□□□□□ -1.8
UPF3P48412 YOR022CYOR022C 2148 nt3.79□□□□□ -1.8
UPF3P48412 MLH2YLR035C 2088 nt3.79□□□□□ -1.8
UPF3P48412 BUD27YFL023W 2391 nt3.79□□□□□ -1.8
UPF3P48412 RRP42YDL111C 798 nt3.79□□□□□ -1.8
UPF3P48412 YER034WYER034W 558 nt3.79□□□□□ -1.8
UPF3P48412 RGI2YIL057C 495 nt3.79□□□□□ -1.8
UPF3P48412 YAL064WYAL064W 285 nt3.79□□□□□ -1.8
UPF3P48412 BET5YML077W 480 nt3.79□□□□□ -1.8
UPF3P48412 YMR087WYMR087W 855 nt3.79□□□□□ -1.8
UPF3P48412 YMR158C-AYMR158C-A 138 nt3.79□□□□□ -1.8
UPF3P48412 YOR097CYOR097C 528 nt3.79□□□□□ -1.8
UPF3P48412 PEX34YCL056C 435 nt3.79□□□□□ -1.8
UPF3P48412 MIG1YGL035C 1515 nt3.79□□□□□ -1.8
UPF3P48412 GAC1YOR178C 2382 nt3.78□□□□□ -1.8
UPF3P48412 SYT1YPR095C 3681 nt3.78□□□□□ -1.8
UPF3P48412 PWP2YCR057C 2772 nt3.78□□□□□ -1.8
UPF3P48412 YDR230WYDR230W 348 nt3.78□□□□□ -1.8
UPF3P48412 MSW1YDR268W 1140 nt3.78□□□□□ -1.8
UPF3P48412 FRQ1YDR373W 573 nt3.78□□□□□ -1.8
UPF3P48412 RPN9YDR427W 1182 nt3.78□□□□□ -1.8
UPF3P48412 YEL032C-AYEL032C-A 162 nt3.78□□□□□ -1.8
UPF3P48412 MAG1YER142C 891 nt3.78□□□□□ -1.8
UPF3P48412 YGL218WYGL218W 651 nt3.78□□□□□ -1.8
UPF3P48412 tR(UCU)Q1tR(UCU)Q1 73 nt3.78□□□□□ -1.8
UPF3P48412 AIR1YIL079C 1083 nt3.78□□□□□ -1.8
UPF3P48412 HIS5YIL116W 1158 nt3.78□□□□□ -1.8
UPF3P48412 CMC1YKL137W 336 nt3.78□□□□□ -1.8
UPF3P48412 PCD1YLR151C 1023 nt3.78□□□□□ -1.8
UPF3P48412 BUR2YLR226W 1188 nt3.78□□□□□ -1.8
UPF3P48412 YLR347W-AYLR347W-A 141 nt3.78□□□□□ -1.8
UPF3P48412 ECM13YBL043W 774 nt3.78□□□□□ -1.8
UPF3P48412 YPL162CYPL162C 822 nt3.78□□□□□ -1.8
UPF3P48412 DUN1YDL101C 1542 nt3.78□□□□□ -1.8
UPF3P48412 TOP1YOL006C 2310 nt3.78□□□□□ -1.8
UPF3P48412 HRD1YOL013C 1656 nt3.78□□□□□ -1.81
UPF3P48412 YGL140CYGL140C 3660 nt3.77□□□□□ -1.81
UPF3P48412 YNR065CYNR065C 3351 nt3.77□□□□□ -1.81
UPF3P48412 CCM1YGR150C 2595 nt3.77□□□□□ -1.81
UPF3P48412 KIN3YAR018C 1308 nt3.77□□□□□ -1.81
UPF3P48412 DET1YDR051C 1005 nt3.77□□□□□ -1.81
UPF3P48412 DPP1YDR284C 870 nt3.77□□□□□ -1.81
UPF3P48412 YEL075CYEL075C 369 nt3.77□□□□□ -1.81
UPF3P48412 YGL204CYGL204C 306 nt3.77□□□□□ -1.81
UPF3P48412 COX18YGR062C 951 nt3.77□□□□□ -1.81
UPF3P48412 PDX1YGR193C 1233 nt3.77□□□□□ -1.81
UPF3P48412 REC104YHR157W 549 nt3.77□□□□□ -1.81
UPF3P48412 CCE1YKL011C 1062 nt3.77□□□□□ -1.81
UPF3P48412 MIC27YNL100W 705 nt3.77□□□□□ -1.81
UPF3P48412 NRK1YNL129W 723 nt3.77□□□□□ -1.81
UPF3P48412 IZH2YOL002C 954 nt3.77□□□□□ -1.81
UPF3P48412 PEX15YOL044W 1152 nt3.77□□□□□ -1.81
UPF3P48412 PHO88YBR106W 567 nt3.77□□□□□ -1.81
UPF3P48412 ZDS2YML109W 2829 nt3.77□□□□□ -1.81
UPF3P48412 MTC4YBR255W 2085 nt3.77□□□□□ -1.81
UPF3P48412 ATP25YMR098C 1839 nt3.77□□□□□ -1.81
UPF3P48412 FMP25YLR077W 1752 nt3.76□□□□□ -1.81
UPF3P48412 ARG2YJL071W 1725 nt3.76□□□□□ -1.81
UPF3P48412 PSP1YDR505C 2526 nt3.76□□□□□ -1.81
UPF3P48412 YLR177WYLR177W 1887 nt3.76□□□□□ -1.81
UPF3P48412 CLB3YDL155W 1284 nt3.76□□□□□ -1.81
UPF3P48412 LSM4YER112W 564 nt3.76□□□□□ -1.81
UPF3P48412 SPT2YER161C 1002 nt3.76□□□□□ -1.81
UPF3P48412 YHR032C-AYHR032C-A 120 nt3.76□□□□□ -1.81
UPF3P48412 YHR097CYHR097C 1101 nt3.76□□□□□ -1.81
UPF3P48412 UTP11YKL099C 753 nt3.76□□□□□ -1.81
UPF3P48412 COQ9YLR201C 783 nt3.76□□□□□ -1.81
UPF3P48412 DLT1YMR126C 1029 nt3.76□□□□□ -1.81
UPF3P48412 YNL319WYNL319W 441 nt3.76□□□□□ -1.81
Retrieved 100 of 7,029 protein–RNA pairs in 18.3 ms