Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.74■□□□□ 0.91
HNF4AP41235 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HNF4AP41235 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HNF4AP41235 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.73■□□□□ 0.91
HNF4AP41235 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HNF4AP41235 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HNF4AP41235 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
HNF4AP41235 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HNF4AP41235 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.73■□□□□ 0.91
HNF4AP41235 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HNF4AP41235 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
HNF4AP41235 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
HNF4AP41235 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.72■□□□□ 0.91
HNF4AP41235 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.72■□□□□ 0.91
HNF4AP41235 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.72■□□□□ 0.91
HNF4AP41235 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.72■□□□□ 0.91
HNF4AP41235 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.72■□□□□ 0.91
HNF4AP41235 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.72■□□□□ 0.91
HNF4AP41235 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.72■□□□□ 0.91
HNF4AP41235 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
HNF4AP41235 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.72■□□□□ 0.91
HNF4AP41235 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.72■□□□□ 0.91
HNF4AP41235 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HNF4AP41235 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.71■□□□□ 0.91
HNF4AP41235 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HNF4AP41235 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
HNF4AP41235 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
HNF4AP41235 IGHV3-19-201ENST00000521488 291 ntBASIC20.71■□□□□ 0.91
HNF4AP41235 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HNF4AP41235 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
HNF4AP41235 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HNF4AP41235 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HNF4AP41235 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HNF4AP41235 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.7■□□□□ 0.9
HNF4AP41235 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.7■□□□□ 0.9
HNF4AP41235 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HNF4AP41235 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HNF4AP41235 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HNF4AP41235 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.7■□□□□ 0.9
HNF4AP41235 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HNF4AP41235 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HNF4AP41235 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HNF4AP41235 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
HNF4AP41235 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HNF4AP41235 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.69■□□□□ 0.9
HNF4AP41235 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.69■□□□□ 0.9
HNF4AP41235 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HNF4AP41235 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.68■□□□□ 0.9
HNF4AP41235 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.68■□□□□ 0.9
HNF4AP41235 AC105265.2-201ENST00000467189 838 ntBASIC20.68■□□□□ 0.9
HNF4AP41235 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.68■□□□□ 0.9
HNF4AP41235 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HNF4AP41235 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.67■□□□□ 0.9
HNF4AP41235 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 AP004607.7-201ENST00000527152 1677 ntBASIC20.67■□□□□ 0.9
HNF4AP41235 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HNF4AP41235 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.67■□□□□ 0.9
HNF4AP41235 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.67■□□□□ 0.9
HNF4AP41235 AC244015.2-201ENST00000616358 1861 ntBASIC20.67■□□□□ 0.9
HNF4AP41235 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.67■□□□□ 0.9
HNF4AP41235 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms