Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 AL138724.1-201ENST00000606771 1088 ntBASIC17.93■□□□□ 0.46
TRAV39A0A0B4J263 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRAV39A0A0B4J263 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.93■□□□□ 0.46
TRAV39A0A0B4J263 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TRAV39A0A0B4J263 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRAV39A0A0B4J263 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 AC011298.3-201ENST00000615796 283 ntBASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 AC087239.1-201ENST00000622671 572 ntBASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRAV39A0A0B4J263 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 AC068587.7-201ENST00000641602 218 ntBASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRAV39A0A0B4J263 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 MIR4767-201ENST00000582827 78 ntBASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 AC005229.4-201ENST00000610085 2198 ntBASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRAV39A0A0B4J263 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRAV39A0A0B4J263 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
TRAV39A0A0B4J263 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRAV39A0A0B4J263 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 OXCT2P1-201ENST00000447263 1535 ntBASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 AC024257.2-201ENST00000549699 147 ntBASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRAV39A0A0B4J263 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 AL136162.1-201ENST00000607711 1078 ntBASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 AC008406.3-201ENST00000620001 1374 ntBASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRAV39A0A0B4J263 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 AC244015.2-201ENST00000616358 1861 ntBASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAV39A0A0B4J263 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms