Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 KRT18P11-201ENST00000435214 1283 ntBASIC31.29■■■□□ 2.6
SENP3Q9H4L4 SDR42E1P3-201ENST00000438345 502 ntBASIC31.29■■■□□ 2.6
SENP3Q9H4L4 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 RNF139-AS1-202ENST00000519861 359 ntTSL 3 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 AC004672.2-201ENST00000537181 574 ntTSL 2 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 DUX4L16-201ENST00000555130 1264 ntBASIC31.29■■■□□ 2.6
SENP3Q9H4L4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 MDK-213ENST00000617138 635 ntTSL 2 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 H19-210ENST00000439725 1929 ntTSL 2 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC31.29■■■□□ 2.6
SENP3Q9H4L4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 LINC00571-201ENST00000434565 521 ntTSL 3 BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC31.28■■■□□ 2.6
SENP3Q9H4L4 LINC00543-201ENST00000567234 1845 ntBASIC31.28■■■□□ 2.6
SENP3Q9H4L4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 SLC7A5P2-201ENST00000553010 536 ntBASIC31.27■■■□□ 2.6
SENP3Q9H4L4 KRT8P2-201ENST00000556193 944 ntBASIC31.27■■■□□ 2.6
SENP3Q9H4L4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 ABCB10P4-201ENST00000566803 2184 ntBASIC31.27■■■□□ 2.6
SENP3Q9H4L4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC31.27■■■□□ 2.6
SENP3Q9H4L4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
SENP3Q9H4L4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 RPS2P52-201ENST00000469610 820 ntBASIC31.26■■■□□ 2.59
SENP3Q9H4L4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
SENP3Q9H4L4 AC004812.2-201ENST00000611079 2094 ntBASIC31.26■■■□□ 2.59
SENP3Q9H4L4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 KRT18P29-201ENST00000397031 1267 ntBASIC31.25■■■□□ 2.59
SENP3Q9H4L4 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 AC069152.1-201ENST00000438030 544 ntBASIC31.25■■■□□ 2.59
SENP3Q9H4L4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC31.25■■■□□ 2.59
SENP3Q9H4L4 AC144521.1-201ENST00000607148 956 ntBASIC31.25■■■□□ 2.59
SENP3Q9H4L4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 AL356019.1-201ENST00000553419 748 ntTSL 2 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC31.24■■■□□ 2.59
SENP3Q9H4L4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3Q9H4L4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3Q9H4L4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC31.23■■■□□ 2.59
SENP3Q9H4L4 AC007322.1-201ENST00000426983 750 ntBASIC31.23■■■□□ 2.59
SENP3Q9H4L4 AC006213.5-201ENST00000619673 288 ntBASIC31.23■■■□□ 2.59
SENP3Q9H4L4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3Q9H4L4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SENP3Q9H4L4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 MKKS-203ENST00000609375 882 ntTSL 2 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 AC142381.3-201ENST00000568208 1670 ntBASIC31.22■■■□□ 2.59
SENP3Q9H4L4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
SENP3Q9H4L4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 AL031058.1-201ENST00000561592 888 ntBASIC31.21■■■□□ 2.59
SENP3Q9H4L4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 AC005332.10-201ENST00000612725 619 ntBASIC31.21■■■□□ 2.59
SENP3Q9H4L4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SENP3Q9H4L4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms