Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AP004607.7-201ENST00000527152 1677 ntBASIC23.86■■□□□ 1.41
CCDC65Q8IXS2 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC65Q8IXS2 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC65Q8IXS2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
CCDC65Q8IXS2 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.85■■□□□ 1.41
CCDC65Q8IXS2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 AC005837.3-201ENST00000612163 286 ntBASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 FBXW4P1-201ENST00000426721 2239 ntBASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC65Q8IXS2 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC65Q8IXS2 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.83■■□□□ 1.4
CCDC65Q8IXS2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.4
CCDC65Q8IXS2 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 AC105233.4-201ENST00000642045 216 ntBASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 AC010542.4-201ENST00000563151 1910 ntBASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC65Q8IXS2 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 MIR572-201ENST00000384983 95 ntBASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.81■■□□□ 1.4
CCDC65Q8IXS2 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 MIR638-201ENST00000385237 100 ntBASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC65Q8IXS2 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC65Q8IXS2 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 AC026471.6-201ENST00000622954 1905 ntBASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms