Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP48Q86UV5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP48Q86UV5 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
USP48Q86UV5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC26.33■■□□□ 1.81
USP48Q86UV5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC26.33■■□□□ 1.81
USP48Q86UV5 AL050303.2-201ENST00000619798 666 ntBASIC26.33■■□□□ 1.81
USP48Q86UV5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC26.33■■□□□ 1.81
USP48Q86UV5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC26.33■■□□□ 1.81
USP48Q86UV5 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP48Q86UV5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
USP48Q86UV5 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
USP48Q86UV5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP48Q86UV5 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC26.32■■□□□ 1.8
USP48Q86UV5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP48Q86UV5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
USP48Q86UV5 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC26.32■■□□□ 1.8
USP48Q86UV5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC26.32■■□□□ 1.8
USP48Q86UV5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC26.32■■□□□ 1.8
USP48Q86UV5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
USP48Q86UV5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP48Q86UV5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
USP48Q86UV5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP48Q86UV5 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP48Q86UV5 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP48Q86UV5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC26.31■■□□□ 1.8
USP48Q86UV5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP48Q86UV5 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
USP48Q86UV5 TSPY6P-201ENST00000448518 926 ntBASIC26.31■■□□□ 1.8
USP48Q86UV5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC26.31■■□□□ 1.8
USP48Q86UV5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC26.31■■□□□ 1.8
USP48Q86UV5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC26.31■■□□□ 1.8
USP48Q86UV5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP48Q86UV5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP48Q86UV5 AC144652.1-201ENST00000609974 1624 ntBASIC26.31■■□□□ 1.8
USP48Q86UV5 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
USP48Q86UV5 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
USP48Q86UV5 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP48Q86UV5 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP48Q86UV5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP48Q86UV5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
USP48Q86UV5 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
USP48Q86UV5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
USP48Q86UV5 MIR4651-201ENST00000582622 73 ntBASIC26.3■■□□□ 1.8
USP48Q86UV5 MFSD11-216ENST00000590393 1141 ntBASIC26.3■■□□□ 1.8
USP48Q86UV5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC26.3■■□□□ 1.8
USP48Q86UV5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP48Q86UV5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
USP48Q86UV5 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC26.29■■□□□ 1.8
USP48Q86UV5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC26.29■■□□□ 1.8
USP48Q86UV5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
USP48Q86UV5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP48Q86UV5 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP48Q86UV5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP48Q86UV5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
USP48Q86UV5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP48Q86UV5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.28■■□□□ 1.8
USP48Q86UV5 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC26.28■■□□□ 1.8
USP48Q86UV5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
USP48Q86UV5 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
USP48Q86UV5 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP48Q86UV5 H19-210ENST00000439725 1929 ntTSL 2 BASIC26.27■■□□□ 1.8
USP48Q86UV5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
USP48Q86UV5 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP48Q86UV5 LINC00565-201ENST00000562710 2331 ntBASIC26.27■■□□□ 1.8
USP48Q86UV5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
USP48Q86UV5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
USP48Q86UV5 AL138781.1-201ENST00000566567 1274 ntBASIC26.27■■□□□ 1.8
USP48Q86UV5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP48Q86UV5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC26.27■■□□□ 1.8
USP48Q86UV5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP48Q86UV5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP48Q86UV5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP48Q86UV5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP48Q86UV5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP48Q86UV5 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC26.26■■□□□ 1.79
USP48Q86UV5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.26■■□□□ 1.79
USP48Q86UV5 SMUG1P1-201ENST00000590640 811 ntBASIC26.26■■□□□ 1.79
USP48Q86UV5 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP48Q86UV5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
USP48Q86UV5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.25■■□□□ 1.79
USP48Q86UV5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC26.25■■□□□ 1.79
USP48Q86UV5 GUSBP6-202ENST00000438529 1198 ntBASIC26.25■■□□□ 1.79
USP48Q86UV5 AC079140.4-201ENST00000507448 529 ntBASIC26.25■■□□□ 1.79
USP48Q86UV5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC26.25■■□□□ 1.79
USP48Q86UV5 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.25■■□□□ 1.79
USP48Q86UV5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
USP48Q86UV5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP48Q86UV5 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms