Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PTCHD3Q3KNS1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
PTCHD3Q3KNS1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 AC092666.2-201ENST00000613287 246 ntBASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
PTCHD3Q3KNS1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 FAM99A-202ENST00000538190 1989 ntBASIC20.96■□□□□ 0.95
PTCHD3Q3KNS1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PTCHD3Q3KNS1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.95■□□□□ 0.95
PTCHD3Q3KNS1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PTCHD3Q3KNS1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
PTCHD3Q3KNS1 FBXW4P1-201ENST00000426721 2239 ntBASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTCHD3Q3KNS1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 MIR6084-201ENST00000622012 110 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms