Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PCDH1Q08174 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH1Q08174 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PCDH1Q08174 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.72■□□□□ 0.91
PCDH1Q08174 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDH1Q08174 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PCDH1Q08174 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH1Q08174 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH1Q08174 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDH1Q08174 AC027682.1-201ENST00000562846 899 ntBASIC20.72■□□□□ 0.91
PCDH1Q08174 SMUG1P1-201ENST00000590640 811 ntBASIC20.72■□□□□ 0.91
PCDH1Q08174 AL031432.3-201ENST00000607698 485 ntBASIC20.72■□□□□ 0.91
PCDH1Q08174 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH1Q08174 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.72■□□□□ 0.91
PCDH1Q08174 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PCDH1Q08174 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.71■□□□□ 0.91
PCDH1Q08174 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.71■□□□□ 0.91
PCDH1Q08174 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.71■□□□□ 0.91
PCDH1Q08174 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PCDH1Q08174 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 AP001330.3-201ENST00000520123 633 ntBASIC20.71■□□□□ 0.91
PCDH1Q08174 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.71■□□□□ 0.91
PCDH1Q08174 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PCDH1Q08174 AL355001.2-201ENST00000620617 1191 ntBASIC20.71■□□□□ 0.91
PCDH1Q08174 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
PCDH1Q08174 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PCDH1Q08174 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.7■□□□□ 0.91
PCDH1Q08174 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH1Q08174 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH1Q08174 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH1Q08174 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH1Q08174 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PCDH1Q08174 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH1Q08174 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.7■□□□□ 0.9
PCDH1Q08174 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.7■□□□□ 0.9
PCDH1Q08174 AC244015.2-201ENST00000616358 1861 ntBASIC20.7■□□□□ 0.9
PCDH1Q08174 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
PCDH1Q08174 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
PCDH1Q08174 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH1Q08174 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 MIR939-201ENST00000401314 82 ntBASIC20.69■□□□□ 0.9
PCDH1Q08174 AC126544.1-201ENST00000580842 1059 ntBASIC20.69■□□□□ 0.9
PCDH1Q08174 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.69■□□□□ 0.9
PCDH1Q08174 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.69■□□□□ 0.9
PCDH1Q08174 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDH1Q08174 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.69■□□□□ 0.9
PCDH1Q08174 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 FBXW4P1-201ENST00000426721 2239 ntBASIC20.68■□□□□ 0.9
PCDH1Q08174 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDH1Q08174 AC099791.1-201ENST00000416440 715 ntBASIC20.68■□□□□ 0.9
PCDH1Q08174 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDH1Q08174 RASA4CP-201ENST00000424092 1398 ntBASIC20.68■□□□□ 0.9
PCDH1Q08174 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDH1Q08174 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
PCDH1Q08174 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.67■□□□□ 0.9
PCDH1Q08174 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 SUDS3P1-201ENST00000505831 966 ntBASIC20.67■□□□□ 0.9
PCDH1Q08174 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDH1Q08174 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.67■□□□□ 0.9
PCDH1Q08174 AC008764.7-201ENST00000593779 1081 ntBASIC20.67■□□□□ 0.9
PCDH1Q08174 AL136967.2-201ENST00000623968 743 ntBASIC20.67■□□□□ 0.9
PCDH1Q08174 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 AP004607.7-201ENST00000527152 1677 ntBASIC20.67■□□□□ 0.9
PCDH1Q08174 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDH1Q08174 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH1Q08174 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH1Q08174 AC091305.1-201ENST00000479476 895 ntBASIC20.66■□□□□ 0.9
PCDH1Q08174 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH1Q08174 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDH1Q08174 AL139246.5-201ENST00000606645 996 ntBASIC20.66■□□□□ 0.9
PCDH1Q08174 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH1Q08174 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH1Q08174 AC026471.6-201ENST00000622954 1905 ntBASIC20.66■□□□□ 0.9
PCDH1Q08174 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PCDH1Q08174 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDH1Q08174 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PCDH1Q08174 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PCDH1Q08174 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms