Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.14■□□□□ 0.81
SOX3P41225 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.14■□□□□ 0.81
SOX3P41225 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.14■□□□□ 0.81
SOX3P41225 MIR6084-201ENST00000622012 110 ntBASIC20.14■□□□□ 0.81
SOX3P41225 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.14■□□□□ 0.81
SOX3P41225 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.14■□□□□ 0.81
SOX3P41225 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SOX3P41225 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.13■□□□□ 0.81
SOX3P41225 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SOX3P41225 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.13■□□□□ 0.81
SOX3P41225 AC010141.3-201ENST00000456659 717 ntBASIC20.13■□□□□ 0.81
SOX3P41225 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.13■□□□□ 0.81
SOX3P41225 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.13■□□□□ 0.81
SOX3P41225 MIR6821-201ENST00000617625 74 ntBASIC20.13■□□□□ 0.81
SOX3P41225 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.13■□□□□ 0.81
SOX3P41225 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.13■□□□□ 0.81
SOX3P41225 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SOX3P41225 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.13■□□□□ 0.81
SOX3P41225 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.13■□□□□ 0.81
SOX3P41225 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.12■□□□□ 0.81
SOX3P41225 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
SOX3P41225 AC097381.1-201ENST00000429019 1296 ntBASIC20.12■□□□□ 0.81
SOX3P41225 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.12■□□□□ 0.81
SOX3P41225 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.12■□□□□ 0.81
SOX3P41225 AL354811.1-201ENST00000610286 706 ntBASIC20.12■□□□□ 0.81
SOX3P41225 AC105233.4-201ENST00000642045 216 ntBASIC20.12■□□□□ 0.81
SOX3P41225 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SOX3P41225 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.12■□□□□ 0.81
SOX3P41225 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SOX3P41225 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SOX3P41225 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SOX3P41225 LINC01960-201ENST00000563759 1884 ntBASIC20.11■□□□□ 0.81
SOX3P41225 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
SOX3P41225 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.1■□□□□ 0.81
SOX3P41225 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SOX3P41225 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.1■□□□□ 0.81
SOX3P41225 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 AC087623.3-201ENST00000607047 1098 ntBASIC20.1■□□□□ 0.81
SOX3P41225 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
SOX3P41225 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.1■□□□□ 0.81
SOX3P41225 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.1■□□□□ 0.81
SOX3P41225 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.1■□□□□ 0.81
SOX3P41225 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SOX3P41225 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SOX3P41225 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.09■□□□□ 0.81
SOX3P41225 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.09■□□□□ 0.81
SOX3P41225 AC027612.3-201ENST00000413684 1047 ntBASIC20.09■□□□□ 0.81
SOX3P41225 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.09■□□□□ 0.81
SOX3P41225 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.09■□□□□ 0.81
SOX3P41225 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.09■□□□□ 0.81
SOX3P41225 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.09■□□□□ 0.81
SOX3P41225 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.09■□□□□ 0.81
SOX3P41225 MIR5787-201ENST00000611784 55 ntBASIC20.09■□□□□ 0.81
SOX3P41225 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SOX3P41225 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SOX3P41225 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SOX3P41225 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SOX3P41225 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SOX3P41225 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SOX3P41225 ESRRAP2-201ENST00000418437 1549 ntBASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms