Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SP2-202ENST00000613139 908 ntTSL 5 BASIC21■□□□□ 0.95
SHMT2P34897 MIR6084-201ENST00000622012 110 ntBASIC21■□□□□ 0.95
SHMT2P34897 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
SHMT2P34897 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SHMT2P34897 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SHMT2P34897 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
SHMT2P34897 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.99■□□□□ 0.95
SHMT2P34897 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SHMT2P34897 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.99■□□□□ 0.95
SHMT2P34897 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.99■□□□□ 0.95
SHMT2P34897 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.99■□□□□ 0.95
SHMT2P34897 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.99■□□□□ 0.95
SHMT2P34897 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SHMT2P34897 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
SHMT2P34897 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SHMT2P34897 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.99■□□□□ 0.95
SHMT2P34897 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SHMT2P34897 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHMT2P34897 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHMT2P34897 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
SHMT2P34897 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.98■□□□□ 0.95
SHMT2P34897 YBX1P1-201ENST00000445822 960 ntBASIC20.98■□□□□ 0.95
SHMT2P34897 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.98■□□□□ 0.95
SHMT2P34897 AL137060.1-201ENST00000618151 2648 ntBASIC20.98■□□□□ 0.95
SHMT2P34897 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SHMT2P34897 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHMT2P34897 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHMT2P34897 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHMT2P34897 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SHMT2P34897 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.97■□□□□ 0.95
SHMT2P34897 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SHMT2P34897 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.97■□□□□ 0.95
SHMT2P34897 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.97■□□□□ 0.95
SHMT2P34897 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.97■□□□□ 0.95
SHMT2P34897 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.97■□□□□ 0.95
SHMT2P34897 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SHMT2P34897 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.97■□□□□ 0.95
SHMT2P34897 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 OR7E47P-201ENST00000546390 1422 ntBASIC20.96■□□□□ 0.95
SHMT2P34897 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 AC097381.1-201ENST00000429019 1296 ntBASIC20.96■□□□□ 0.95
SHMT2P34897 AC123595.1-201ENST00000440769 1046 ntBASIC20.96■□□□□ 0.95
SHMT2P34897 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.96■□□□□ 0.95
SHMT2P34897 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SHMT2P34897 MIR6821-201ENST00000617625 74 ntBASIC20.96■□□□□ 0.95
SHMT2P34897 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.96■□□□□ 0.95
SHMT2P34897 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.96■□□□□ 0.95
SHMT2P34897 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 BX005040.4-201ENST00000637145 1518 ntBASIC20.95■□□□□ 0.94
SHMT2P34897 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SHMT2P34897 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.95■□□□□ 0.94
SHMT2P34897 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SHMT2P34897 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SHMT2P34897 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 AC026271.2-201ENST00000428091 497 ntBASIC20.94■□□□□ 0.94
SHMT2P34897 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SHMT2P34897 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.94■□□□□ 0.94
SHMT2P34897 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.94■□□□□ 0.94
SHMT2P34897 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SHMT2P34897 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHMT2P34897 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHMT2P34897 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SHMT2P34897 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms