Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXD4P09016 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HOXD4P09016 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXD4P09016 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HOXD4P09016 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXD4P09016 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXD4P09016 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
HOXD4P09016 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HOXD4P09016 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXD4P09016 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
HOXD4P09016 AC009237.3-201ENST00000393279 1427 ntBASIC19.42■□□□□ 0.7
HOXD4P09016 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXD4P09016 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXD4P09016 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
HOXD4P09016 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXD4P09016 AC016769.1-201ENST00000409132 1010 ntBASIC19.41■□□□□ 0.7
HOXD4P09016 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXD4P09016 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 AC092068.2-201ENST00000590491 1708 ntBASIC19.41■□□□□ 0.7
HOXD4P09016 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HOXD4P09016 AP004607.4-201ENST00000530158 1459 ntBASIC19.41■□□□□ 0.7
HOXD4P09016 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXD4P09016 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXD4P09016 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
HOXD4P09016 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
HOXD4P09016 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HOXD4P09016 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXD4P09016 AC006015.1-201ENST00000429970 570 ntBASIC19.4■□□□□ 0.7
HOXD4P09016 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXD4P09016 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXD4P09016 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXD4P09016 AC137761.2-201ENST00000561729 223 ntBASIC19.4■□□□□ 0.7
HOXD4P09016 AC145350.3-201ENST00000569033 163 ntBASIC19.4■□□□□ 0.7
HOXD4P09016 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HOXD4P09016 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXD4P09016 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXD4P09016 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXD4P09016 DUSP8P3-201ENST00000399571 1760 ntBASIC19.39■□□□□ 0.7
HOXD4P09016 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXD4P09016 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.39■□□□□ 0.7
HOXD4P09016 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXD4P09016 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HOXD4P09016 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
HOXD4P09016 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXD4P09016 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXD4P09016 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD4P09016 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD4P09016 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXD4P09016 HLA-L-209ENST00000420110 1011 ntBASIC19.38■□□□□ 0.69
HOXD4P09016 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD4P09016 KRT18P11-201ENST00000435214 1283 ntBASIC19.38■□□□□ 0.69
HOXD4P09016 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXD4P09016 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXD4P09016 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXD4P09016 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXD4P09016 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD4P09016 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXD4P09016 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD4P09016 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXD4P09016 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXD4P09016 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXD4P09016 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXD4P09016 AC079140.4-201ENST00000507448 529 ntBASIC19.37■□□□□ 0.69
HOXD4P09016 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HOXD4P09016 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXD4P09016 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXD4P09016 AC080038.1-201ENST00000611274 1154 ntBASIC19.37■□□□□ 0.69
HOXD4P09016 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
HOXD4P09016 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXD4P09016 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms