Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC27.3■■□□□ 1.96
CACNA1FO60840 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CACNA1FO60840 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
CACNA1FO60840 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
CACNA1FO60840 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC27.29■■□□□ 1.96
CACNA1FO60840 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC27.29■■□□□ 1.96
CACNA1FO60840 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.29■■□□□ 1.96
CACNA1FO60840 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC27.29■■□□□ 1.96
CACNA1FO60840 AC104187.1-201ENST00000607510 612 ntBASIC27.29■■□□□ 1.96
CACNA1FO60840 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CACNA1FO60840 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CACNA1FO60840 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC27.29■■□□□ 1.96
CACNA1FO60840 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
CACNA1FO60840 COX20-201ENST00000366528 568 ntTSL 2 BASIC27.28■■□□□ 1.96
CACNA1FO60840 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC27.28■■□□□ 1.96
CACNA1FO60840 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CACNA1FO60840 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.28■■□□□ 1.96
CACNA1FO60840 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CACNA1FO60840 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC27.28■■□□□ 1.96
CACNA1FO60840 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CACNA1FO60840 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CACNA1FO60840 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CACNA1FO60840 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CACNA1FO60840 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC27.28■■□□□ 1.96
CACNA1FO60840 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CACNA1FO60840 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.28■■□□□ 1.96
CACNA1FO60840 IKBKGP1-201ENST00000612193 1073 ntBASIC27.28■■□□□ 1.96
CACNA1FO60840 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
CACNA1FO60840 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CACNA1FO60840 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CACNA1FO60840 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CACNA1FO60840 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CACNA1FO60840 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.27■■□□□ 1.96
CACNA1FO60840 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC27.27■■□□□ 1.96
CACNA1FO60840 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CACNA1FO60840 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 AC138907.5-202ENST00000569484 235 ntBASIC27.27■■□□□ 1.96
CACNA1FO60840 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC27.27■■□□□ 1.96
CACNA1FO60840 TERT-206ENST00000508104 2486 ntTSL 5 BASIC27.27■■□□□ 1.96
CACNA1FO60840 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
CACNA1FO60840 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
CACNA1FO60840 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
CACNA1FO60840 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CACNA1FO60840 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC27.26■■□□□ 1.95
CACNA1FO60840 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.26■■□□□ 1.95
CACNA1FO60840 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC27.25■■□□□ 1.95
CACNA1FO60840 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC27.25■■□□□ 1.95
CACNA1FO60840 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC27.25■■□□□ 1.95
CACNA1FO60840 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CACNA1FO60840 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CACNA1FO60840 AC079140.4-201ENST00000507448 529 ntBASIC27.24■■□□□ 1.95
CACNA1FO60840 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.24■■□□□ 1.95
CACNA1FO60840 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CACNA1FO60840 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC27.24■■□□□ 1.95
CACNA1FO60840 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CACNA1FO60840 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CACNA1FO60840 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC27.24■■□□□ 1.95
CACNA1FO60840 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
CACNA1FO60840 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC27.24■■□□□ 1.95
CACNA1FO60840 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.23■■□□□ 1.95
CACNA1FO60840 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
CACNA1FO60840 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CACNA1FO60840 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
CACNA1FO60840 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.22■■□□□ 1.95
CACNA1FO60840 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
CACNA1FO60840 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.22■■□□□ 1.95
CACNA1FO60840 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC27.22■■□□□ 1.95
CACNA1FO60840 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC27.22■■□□□ 1.95
CACNA1FO60840 LINC02228-203ENST00000641970 1355 ntBASIC27.21■■□□□ 1.95
CACNA1FO60840 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC27.21■■□□□ 1.95
CACNA1FO60840 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CACNA1FO60840 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms