Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.2■□□□□ 0.5
SDCBPO00560 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SDCBPO00560 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.19■□□□□ 0.5
SDCBPO00560 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
SDCBPO00560 AC073130.3-201ENST00000624389 2278 ntBASIC18.19■□□□□ 0.5
SDCBPO00560 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SDCBPO00560 AC241377.3-202ENST00000626088 1088 ntBASIC18.19■□□□□ 0.5
SDCBPO00560 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SDCBPO00560 AC241585.3-202ENST00000628937 1088 ntBASIC18.19■□□□□ 0.5
SDCBPO00560 AC245100.8-202ENST00000629247 1058 ntBASIC18.19■□□□□ 0.5
SDCBPO00560 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SDCBPO00560 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.19■□□□□ 0.5
SDCBPO00560 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SDCBPO00560 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.19■□□□□ 0.5
SDCBPO00560 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.19■□□□□ 0.5
SDCBPO00560 AF106564.1-201ENST00000607058 2553 ntBASIC18.19■□□□□ 0.5
SDCBPO00560 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.19■□□□□ 0.5
SDCBPO00560 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
SDCBPO00560 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.18■□□□□ 0.5
SDCBPO00560 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.18■□□□□ 0.5
SDCBPO00560 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SDCBPO00560 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.18■□□□□ 0.5
SDCBPO00560 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.18■□□□□ 0.5
SDCBPO00560 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SDCBPO00560 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.18■□□□□ 0.5
SDCBPO00560 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.18■□□□□ 0.5
SDCBPO00560 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.17■□□□□ 0.5
SDCBPO00560 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SDCBPO00560 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.17■□□□□ 0.5
SDCBPO00560 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 AL356441.2-201ENST00000443009 864 ntBASIC18.17■□□□□ 0.5
SDCBPO00560 MIR3621-201ENST00000580529 85 ntBASIC18.17■□□□□ 0.5
SDCBPO00560 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.17■□□□□ 0.5
SDCBPO00560 CA15P2-201ENST00000611168 834 ntBASIC18.17■□□□□ 0.5
SDCBPO00560 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.17■□□□□ 0.5
SDCBPO00560 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SDCBPO00560 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SDCBPO00560 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SDCBPO00560 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 Z98882.1-201ENST00000622160 2253 ntBASIC18.16■□□□□ 0.5
SDCBPO00560 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.16■□□□□ 0.5
SDCBPO00560 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC18.16■□□□□ 0.5
SDCBPO00560 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.16■□□□□ 0.5
SDCBPO00560 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.16■□□□□ 0.5
SDCBPO00560 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
SDCBPO00560 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SDCBPO00560 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SDCBPO00560 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.15■□□□□ 0.5
SDCBPO00560 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SDCBPO00560 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDCBPO00560 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SDCBPO00560 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SDCBPO00560 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms