Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 PARP1-202ENST00000366792 553 ntTSL 3 BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC41.21■■■■■ 4.19
SHROOM4Q9ULL8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC41.2■■■■■ 4.19
SHROOM4Q9ULL8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC41.2■■■■■ 4.19
SHROOM4Q9ULL8 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC41.2■■■■■ 4.19
SHROOM4Q9ULL8 AC092068.2-201ENST00000590491 1708 ntBASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 GCSHP5-201ENST00000443090 522 ntBASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC41.19■■■■■ 4.18
SHROOM4Q9ULL8 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 AC104187.1-201ENST00000607510 612 ntBASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
SHROOM4Q9ULL8 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC41.17■■■■■ 4.18
SHROOM4Q9ULL8 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC41.17■■■■■ 4.18
SHROOM4Q9ULL8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC41.17■■■■■ 4.18
SHROOM4Q9ULL8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC41.17■■■■■ 4.18
SHROOM4Q9ULL8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC41.17■■■■■ 4.18
SHROOM4Q9ULL8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC41.16■■■■■ 4.18
SHROOM4Q9ULL8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC41.16■■■■■ 4.18
SHROOM4Q9ULL8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC41.16■■■■■ 4.18
SHROOM4Q9ULL8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC41.16■■■■■ 4.18
SHROOM4Q9ULL8 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 SLC7A5P1-201ENST00000568957 537 ntBASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC41.15■■■■■ 4.18
SHROOM4Q9ULL8 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
SHROOM4Q9ULL8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC41.13■■■■■ 4.18
SHROOM4Q9ULL8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC41.13■■■■■ 4.17
SHROOM4Q9ULL8 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC41.13■■■■■ 4.17
SHROOM4Q9ULL8 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC41.12■■■■■ 4.17
SHROOM4Q9ULL8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 MARS-234ENST00000630571 216 ntTSL 5 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 MARS-235ENST00000630803 183 ntTSL 3 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 ASL-203ENST00000380839 1765 ntTSL 5 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC41.11■■■■■ 4.17
SHROOM4Q9ULL8 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 OXCT2P1-201ENST00000447263 1535 ntBASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC41.1■■■■■ 4.17
SHROOM4Q9ULL8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC41.09■■■■■ 4.17
SHROOM4Q9ULL8 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC41.08■■■■■ 4.17
SHROOM4Q9ULL8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC41.07■■■■■ 4.16
SHROOM4Q9ULL8 RARRES2P4-201ENST00000514074 484 ntBASIC41.07■■■■■ 4.16
SHROOM4Q9ULL8 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC41.07■■■■■ 4.16
SHROOM4Q9ULL8 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 THRA-202ENST00000394121 2260 ntTSL 2 BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 MIR4758-201ENST00000577688 71 ntBASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC41.06■■■■■ 4.16
SHROOM4Q9ULL8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC41.06■■■■■ 4.16
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms