Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COPS4Q9BT78 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COPS4Q9BT78 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 KRT125P-201ENST00000546827 989 ntBASIC19.66■□□□□ 0.74
COPS4Q9BT78 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COPS4Q9BT78 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COPS4Q9BT78 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 LINC01529-204ENST00000636474 1715 ntBASIC19.65■□□□□ 0.74
COPS4Q9BT78 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
COPS4Q9BT78 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COPS4Q9BT78 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.64■□□□□ 0.74
COPS4Q9BT78 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.64■□□□□ 0.74
COPS4Q9BT78 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COPS4Q9BT78 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
COPS4Q9BT78 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
COPS4Q9BT78 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COPS4Q9BT78 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 RARRES2P1-201ENST00000474487 481 ntBASIC19.64■□□□□ 0.73
COPS4Q9BT78 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 AC005703.6-201ENST00000623265 1329 ntBASIC19.64■□□□□ 0.73
COPS4Q9BT78 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.64■□□□□ 0.73
COPS4Q9BT78 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COPS4Q9BT78 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
COPS4Q9BT78 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 MIR6722-201ENST00000617286 78 ntBASIC19.63■□□□□ 0.73
COPS4Q9BT78 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.63■□□□□ 0.73
COPS4Q9BT78 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
COPS4Q9BT78 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COPS4Q9BT78 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.63■□□□□ 0.73
COPS4Q9BT78 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms