Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 AL031602.1-201ENST00000633169 911 ntBASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRIM56Q9BRZ2 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 MIR4466-201ENST00000606121 54 ntBASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 AC026471.6-201ENST00000622954 1905 ntBASIC21.9■■□□□ 1.1
TRIM56Q9BRZ2 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
TRIM56Q9BRZ2 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.89■■□□□ 1.1
TRIM56Q9BRZ2 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
TRIM56Q9BRZ2 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.89■■□□□ 1.1
TRIM56Q9BRZ2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRIM56Q9BRZ2 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRIM56Q9BRZ2 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 AC010525.1-201ENST00000585559 441 ntBASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRIM56Q9BRZ2 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 SRD5A1P1-201ENST00000442297 786 ntBASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRIM56Q9BRZ2 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRIM56Q9BRZ2 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms