Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KLHDC3Q9BQ90 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.66■□□□□ 0.74
KLHDC3Q9BQ90 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
KLHDC3Q9BQ90 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.66■□□□□ 0.74
KLHDC3Q9BQ90 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 C11orf96-202ENST00000528572 1834 ntBASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 MIR572-201ENST00000384983 95 ntBASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 MIR6084-201ENST00000622012 110 ntBASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.65■□□□□ 0.74
KLHDC3Q9BQ90 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
KLHDC3Q9BQ90 FAM99A-202ENST00000538190 1989 ntBASIC19.64■□□□□ 0.74
KLHDC3Q9BQ90 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
KLHDC3Q9BQ90 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
KLHDC3Q9BQ90 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
KLHDC3Q9BQ90 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 AC105233.4-201ENST00000642045 216 ntBASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
KLHDC3Q9BQ90 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.63■□□□□ 0.73
KLHDC3Q9BQ90 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
KLHDC3Q9BQ90 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
KLHDC3Q9BQ90 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KLHDC3Q9BQ90 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms