Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.98■□□□□ 0.95
PKP4Q99569 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKP4Q99569 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 C11orf96-202ENST00000528572 1834 ntBASIC20.97■□□□□ 0.95
PKP4Q99569 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.97■□□□□ 0.95
PKP4Q99569 AC105233.4-201ENST00000642045 216 ntBASIC20.97■□□□□ 0.95
PKP4Q99569 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.97■□□□□ 0.95
PKP4Q99569 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKP4Q99569 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.97■□□□□ 0.95
PKP4Q99569 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.96■□□□□ 0.95
PKP4Q99569 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
PKP4Q99569 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.96■□□□□ 0.95
PKP4Q99569 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKP4Q99569 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PKP4Q99569 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
PKP4Q99569 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP4Q99569 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PKP4Q99569 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP4Q99569 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP4Q99569 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP4Q99569 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.95■□□□□ 0.94
PKP4Q99569 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKP4Q99569 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.95■□□□□ 0.94
PKP4Q99569 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKP4Q99569 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.94■□□□□ 0.94
PKP4Q99569 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP4Q99569 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.94■□□□□ 0.94
PKP4Q99569 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP4Q99569 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKP4Q99569 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.94■□□□□ 0.94
PKP4Q99569 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.94■□□□□ 0.94
PKP4Q99569 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PKP4Q99569 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKP4Q99569 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 AP004607.7-201ENST00000527152 1677 ntBASIC20.93■□□□□ 0.94
PKP4Q99569 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PKP4Q99569 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.93■□□□□ 0.94
PKP4Q99569 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.93■□□□□ 0.94
PKP4Q99569 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PKP4Q99569 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.92■□□□□ 0.94
PKP4Q99569 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKP4Q99569 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.92■□□□□ 0.94
PKP4Q99569 FAM99A-202ENST00000538190 1989 ntBASIC20.92■□□□□ 0.94
PKP4Q99569 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.92■□□□□ 0.94
PKP4Q99569 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PKP4Q99569 IRS3P-201ENST00000223076 1006 ntBASIC20.92■□□□□ 0.94
PKP4Q99569 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.92■□□□□ 0.94
PKP4Q99569 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.92■□□□□ 0.94
PKP4Q99569 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.92■□□□□ 0.94
PKP4Q99569 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.92■□□□□ 0.94
PKP4Q99569 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.92■□□□□ 0.94
PKP4Q99569 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PKP4Q99569 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
PKP4Q99569 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms