Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK3Q8IV63 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
VRK3Q8IV63 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK3Q8IV63 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK3Q8IV63 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VRK3Q8IV63 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VRK3Q8IV63 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.12■□□□□ 0.97
VRK3Q8IV63 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VRK3Q8IV63 C11orf96-202ENST00000528572 1834 ntBASIC21.12■□□□□ 0.97
VRK3Q8IV63 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.12■□□□□ 0.97
VRK3Q8IV63 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VRK3Q8IV63 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK3Q8IV63 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.11■□□□□ 0.97
VRK3Q8IV63 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VRK3Q8IV63 IRS3P-201ENST00000223076 1006 ntBASIC21.11■□□□□ 0.97
VRK3Q8IV63 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.11■□□□□ 0.97
VRK3Q8IV63 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VRK3Q8IV63 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VRK3Q8IV63 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VRK3Q8IV63 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VRK3Q8IV63 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 AC026471.6-201ENST00000622954 1905 ntBASIC21.1■□□□□ 0.97
VRK3Q8IV63 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 AP004607.7-201ENST00000527152 1677 ntBASIC21.1■□□□□ 0.97
VRK3Q8IV63 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VRK3Q8IV63 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VRK3Q8IV63 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 FAM99A-202ENST00000538190 1989 ntBASIC21.1■□□□□ 0.97
VRK3Q8IV63 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
VRK3Q8IV63 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.09■□□□□ 0.97
VRK3Q8IV63 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 AC012414.1-201ENST00000556676 535 ntBASIC21.09■□□□□ 0.97
VRK3Q8IV63 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 MIR6084-201ENST00000622012 110 ntBASIC21.09■□□□□ 0.97
VRK3Q8IV63 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.09■□□□□ 0.97
VRK3Q8IV63 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VRK3Q8IV63 LINC00565-201ENST00000562710 2331 ntBASIC21.09■□□□□ 0.97
VRK3Q8IV63 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.08■□□□□ 0.97
VRK3Q8IV63 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.08■□□□□ 0.97
VRK3Q8IV63 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.08■□□□□ 0.97
VRK3Q8IV63 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VRK3Q8IV63 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.08■□□□□ 0.97
VRK3Q8IV63 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VRK3Q8IV63 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
VRK3Q8IV63 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VRK3Q8IV63 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.96
VRK3Q8IV63 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
VRK3Q8IV63 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.08■□□□□ 0.96
VRK3Q8IV63 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VRK3Q8IV63 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VRK3Q8IV63 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.07■□□□□ 0.96
VRK3Q8IV63 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VRK3Q8IV63 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms