Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 AC010536.3-201ENST00000620306 533 ntBASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 DUSP5P2-201ENST00000426873 1033 ntBASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CSPG4Q6UVK1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CSPG4Q6UVK1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CSPG4Q6UVK1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 AP006294.2-201ENST00000641667 209 ntBASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
CSPG4Q6UVK1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 AC142381.4-202ENST00000563973 229 ntBASIC17.81■□□□□ 0.44
CSPG4Q6UVK1 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 AC010141.3-201ENST00000456659 717 ntBASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 AC008550.1-201ENST00000511500 884 ntBASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 AC092118.2-201ENST00000613495 667 ntBASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 AC068338.2-201ENST00000563278 1430 ntBASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CSPG4Q6UVK1 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 AL353803.4-201ENST00000565882 1934 ntBASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CSPG4Q6UVK1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.78■□□□□ 0.44
CSPG4Q6UVK1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms