Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 AC006015.1-201ENST00000429970 570 ntBASIC21.23■□□□□ 0.99
SRP54P61011 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.23■□□□□ 0.99
SRP54P61011 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.23■□□□□ 0.99
SRP54P61011 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.23■□□□□ 0.99
SRP54P61011 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.23■□□□□ 0.99
SRP54P61011 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.23■□□□□ 0.99
SRP54P61011 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.23■□□□□ 0.99
SRP54P61011 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SRP54P61011 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SRP54P61011 OR7E47P-201ENST00000546390 1422 ntBASIC21.22■□□□□ 0.99
SRP54P61011 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SRP54P61011 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.22■□□□□ 0.99
SRP54P61011 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.22■□□□□ 0.99
SRP54P61011 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.22■□□□□ 0.99
SRP54P61011 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.22■□□□□ 0.99
SRP54P61011 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SRP54P61011 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SRP54P61011 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SRP54P61011 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SRP54P61011 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SRP54P61011 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SRP54P61011 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SRP54P61011 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SRP54P61011 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SRP54P61011 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.21■□□□□ 0.99
SRP54P61011 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.21■□□□□ 0.99
SRP54P61011 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SRP54P61011 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.21■□□□□ 0.99
SRP54P61011 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SRP54P61011 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.2■□□□□ 0.98
SRP54P61011 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.2■□□□□ 0.98
SRP54P61011 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.2■□□□□ 0.98
SRP54P61011 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.2■□□□□ 0.98
SRP54P61011 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.2■□□□□ 0.98
SRP54P61011 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 AP004607.7-201ENST00000527152 1677 ntBASIC21.2■□□□□ 0.98
SRP54P61011 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.2■□□□□ 0.98
SRP54P61011 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRP54P61011 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SRP54P61011 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SRP54P61011 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SRP54P61011 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.19■□□□□ 0.98
SRP54P61011 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.19■□□□□ 0.98
SRP54P61011 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.19■□□□□ 0.98
SRP54P61011 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.19■□□□□ 0.98
SRP54P61011 LINC00526-201ENST00000581067 1875 ntBASIC21.19■□□□□ 0.98
SRP54P61011 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.19■□□□□ 0.98
SRP54P61011 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRP54P61011 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.19■□□□□ 0.98
SRP54P61011 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SRP54P61011 DUSP8P5-201ENST00000422884 1815 ntBASIC21.18■□□□□ 0.98
SRP54P61011 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SRP54P61011 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SRP54P61011 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SRP54P61011 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SRP54P61011 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.18■□□□□ 0.98
SRP54P61011 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.18■□□□□ 0.98
SRP54P61011 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.18■□□□□ 0.98
SRP54P61011 KRT87P-202ENST00000534226 1464 ntBASIC21.18■□□□□ 0.98
SRP54P61011 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.18■□□□□ 0.98
SRP54P61011 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SRP54P61011 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRP54P61011 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRP54P61011 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.17■□□□□ 0.98
SRP54P61011 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
SRP54P61011 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.17■□□□□ 0.98
SRP54P61011 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.17■□□□□ 0.98
SRP54P61011 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.17■□□□□ 0.98
SRP54P61011 AC080038.1-201ENST00000611274 1154 ntBASIC21.17■□□□□ 0.98
SRP54P61011 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SRP54P61011 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SRP54P61011 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRP54P61011 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.17■□□□□ 0.98
SRP54P61011 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRP54P61011 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRP54P61011 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SRP54P61011 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
SRP54P61011 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SRP54P61011 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms