Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.9■□□□□ 0.62
LMX1BO60663 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LMX1BO60663 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.9■□□□□ 0.62
LMX1BO60663 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LMX1BO60663 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LMX1BO60663 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LMX1BO60663 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
LMX1BO60663 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.89■□□□□ 0.61
LMX1BO60663 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LMX1BO60663 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 SERBP1P1-201ENST00000396021 1160 ntBASIC18.89■□□□□ 0.61
LMX1BO60663 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.89■□□□□ 0.61
LMX1BO60663 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1BO60663 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.88■□□□□ 0.61
LMX1BO60663 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.88■□□□□ 0.61
LMX1BO60663 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.88■□□□□ 0.61
LMX1BO60663 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.88■□□□□ 0.61
LMX1BO60663 AC099791.2-201ENST00000605725 427 ntBASIC18.88■□□□□ 0.61
LMX1BO60663 AC087623.3-201ENST00000607047 1098 ntBASIC18.88■□□□□ 0.61
LMX1BO60663 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.88■□□□□ 0.61
LMX1BO60663 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.88■□□□□ 0.61
LMX1BO60663 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.88■□□□□ 0.61
LMX1BO60663 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LMX1BO60663 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1BO60663 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LMX1BO60663 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LMX1BO60663 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.87■□□□□ 0.61
LMX1BO60663 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 AL162430.1-201ENST00000480705 870 ntBASIC18.87■□□□□ 0.61
LMX1BO60663 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1BO60663 AC008764.7-201ENST00000593779 1081 ntBASIC18.87■□□□□ 0.61
LMX1BO60663 AL499627.2-201ENST00000606283 725 ntBASIC18.87■□□□□ 0.61
LMX1BO60663 AL138724.1-201ENST00000606771 1088 ntBASIC18.87■□□□□ 0.61
LMX1BO60663 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1BO60663 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1BO60663 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.87■□□□□ 0.61
LMX1BO60663 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.87■□□□□ 0.61
LMX1BO60663 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1BO60663 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.87■□□□□ 0.61
LMX1BO60663 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.87■□□□□ 0.61
LMX1BO60663 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.86■□□□□ 0.61
LMX1BO60663 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LMX1BO60663 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
LMX1BO60663 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.86■□□□□ 0.61
LMX1BO60663 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.86■□□□□ 0.61
LMX1BO60663 IRS3P-201ENST00000223076 1006 ntBASIC18.86■□□□□ 0.61
LMX1BO60663 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 AC006455.2-201ENST00000429931 906 ntBASIC18.86■□□□□ 0.61
LMX1BO60663 AC011298.3-201ENST00000615796 283 ntBASIC18.86■□□□□ 0.61
LMX1BO60663 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
LMX1BO60663 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1BO60663 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.85■□□□□ 0.61
LMX1BO60663 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1BO60663 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.85■□□□□ 0.61
LMX1BO60663 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.85■□□□□ 0.61
LMX1BO60663 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1BO60663 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1BO60663 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1BO60663 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms