Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGB3O15347 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGB3O15347 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGB3O15347 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HMGB3O15347 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGB3O15347 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB3O15347 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 AC010542.4-201ENST00000563151 1910 ntBASIC17.34■□□□□ 0.37
HMGB3O15347 AC087742.1-201ENST00000575880 1738 ntBASIC17.34■□□□□ 0.37
HMGB3O15347 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGB3O15347 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGB3O15347 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGB3O15347 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.33■□□□□ 0.37
HMGB3O15347 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB3O15347 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB3O15347 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB3O15347 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGB3O15347 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.33■□□□□ 0.37
HMGB3O15347 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGB3O15347 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGB3O15347 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HMGB3O15347 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HMGB3O15347 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGB3O15347 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGB3O15347 AC009831.1-201ENST00000580420 1582 ntBASIC17.32■□□□□ 0.36
HMGB3O15347 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HMGB3O15347 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HMGB3O15347 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
HMGB3O15347 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGB3O15347 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
HMGB3O15347 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HMGB3O15347 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
HMGB3O15347 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGB3O15347 AC133552.2-201ENST00000619106 1032 ntBASIC17.31■□□□□ 0.36
HMGB3O15347 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB3O15347 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB3O15347 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB3O15347 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
HMGB3O15347 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGB3O15347 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGB3O15347 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HMGB3O15347 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGB3O15347 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB3O15347 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms