Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
DDX4Q9NQI0 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.7■■□□□ 1.7
DDX4Q9NQI0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
DDX4Q9NQI0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
DDX4Q9NQI0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC25.69■■□□□ 1.7
DDX4Q9NQI0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 KRT18P11-201ENST00000435214 1283 ntBASIC25.68■■□□□ 1.7
DDX4Q9NQI0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.68■■□□□ 1.7
DDX4Q9NQI0 AP004607.7-201ENST00000527152 1677 ntBASIC25.68■■□□□ 1.7
DDX4Q9NQI0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 AC104771.1-201ENST00000603335 964 ntBASIC25.67■■□□□ 1.7
DDX4Q9NQI0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.67■■□□□ 1.7
DDX4Q9NQI0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 UBE2DNL-204ENST00000602536 740 ntBASIC25.66■■□□□ 1.7
DDX4Q9NQI0 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.66■■□□□ 1.7
DDX4Q9NQI0 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 MIR663A-201ENST00000385250 93 ntBASIC25.65■■□□□ 1.7
DDX4Q9NQI0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
DDX4Q9NQI0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.64■■□□□ 1.7
DDX4Q9NQI0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
DDX4Q9NQI0 AC006970.2-201ENST00000450065 779 ntBASIC25.64■■□□□ 1.7
DDX4Q9NQI0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.64■■□□□ 1.7
DDX4Q9NQI0 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
DDX4Q9NQI0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
DDX4Q9NQI0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
DDX4Q9NQI0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
DDX4Q9NQI0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 NCF1B-203ENST00000435988 1254 ntBASIC25.63■■□□□ 1.69
DDX4Q9NQI0 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 AP001160.3-201ENST00000601484 763 ntBASIC25.63■■□□□ 1.69
DDX4Q9NQI0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
DDX4Q9NQI0 AC087742.1-201ENST00000575880 1738 ntBASIC25.63■■□□□ 1.69
DDX4Q9NQI0 OR7E47P-201ENST00000546390 1422 ntBASIC25.63■■□□□ 1.69
DDX4Q9NQI0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 DUX4L16-201ENST00000555130 1264 ntBASIC25.62■■□□□ 1.69
DDX4Q9NQI0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 AL050303.2-201ENST00000619798 666 ntBASIC25.62■■□□□ 1.69
DDX4Q9NQI0 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
DDX4Q9NQI0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms