Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.15■□□□□ 0.66
COL12A1Q99715 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL12A1Q99715 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL12A1Q99715 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.15■□□□□ 0.66
COL12A1Q99715 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
COL12A1Q99715 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL12A1Q99715 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL12A1Q99715 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
COL12A1Q99715 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
COL12A1Q99715 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL12A1Q99715 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.14■□□□□ 0.66
COL12A1Q99715 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL12A1Q99715 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.14■□□□□ 0.65
COL12A1Q99715 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.14■□□□□ 0.65
COL12A1Q99715 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.14■□□□□ 0.65
COL12A1Q99715 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL12A1Q99715 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.14■□□□□ 0.65
COL12A1Q99715 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.14■□□□□ 0.65
COL12A1Q99715 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
COL12A1Q99715 AL161729.1-201ENST00000604104 1402 ntBASIC19.13■□□□□ 0.65
COL12A1Q99715 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.13■□□□□ 0.65
COL12A1Q99715 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 MYCNOS-205ENST00000641950 531 ntBASIC19.13■□□□□ 0.65
COL12A1Q99715 AC142086.6-201ENST00000621154 1765 ntBASIC19.13■□□□□ 0.65
COL12A1Q99715 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL12A1Q99715 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 ARMC10P1-201ENST00000313754 855 ntBASIC19.12■□□□□ 0.65
COL12A1Q99715 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.12■□□□□ 0.65
COL12A1Q99715 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.12■□□□□ 0.65
COL12A1Q99715 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.12■□□□□ 0.65
COL12A1Q99715 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.12■□□□□ 0.65
COL12A1Q99715 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.12■□□□□ 0.65
COL12A1Q99715 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 SNORA78-201ENST00000459373 127 ntBASIC19.12■□□□□ 0.65
COL12A1Q99715 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.12■□□□□ 0.65
COL12A1Q99715 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL12A1Q99715 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.12■□□□□ 0.65
COL12A1Q99715 AC013268.1-206ENST00000638368 961 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 AC112229.1-201ENST00000639295 961 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.11■□□□□ 0.65
COL12A1Q99715 DUSP8P5-201ENST00000422884 1815 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 BX276092.2-201ENST00000417668 665 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 CYP2T1P-201ENST00000432607 1285 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.11■□□□□ 0.65
COL12A1Q99715 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 RN7SL850P-201ENST00000579959 291 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL12A1Q99715 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.11■□□□□ 0.65
COL12A1Q99715 FP325331.1-202ENST00000623531 1380 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.11■□□□□ 0.65
COL12A1Q99715 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.11■□□□□ 0.65
COL12A1Q99715 C2orf69P4-201ENST00000565394 541 ntBASIC19.11■□□□□ 0.65
COL12A1Q99715 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.11■□□□□ 0.65
COL12A1Q99715 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.1■□□□□ 0.65
COL12A1Q99715 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.1■□□□□ 0.65
COL12A1Q99715 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 AC097493.4-201ENST00000641197 219 ntBASIC19.1■□□□□ 0.65
COL12A1Q99715 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
COL12A1Q99715 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL12A1Q99715 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms