Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDX2Q99626 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CDX2Q99626 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDX2Q99626 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDX2Q99626 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC23.03■■□□□ 1.28
CDX2Q99626 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.03■■□□□ 1.28
CDX2Q99626 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.03■■□□□ 1.28
CDX2Q99626 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.03■■□□□ 1.28
CDX2Q99626 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CDX2Q99626 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CDX2Q99626 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.02■■□□□ 1.28
CDX2Q99626 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
CDX2Q99626 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.02■■□□□ 1.28
CDX2Q99626 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.02■■□□□ 1.28
CDX2Q99626 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.02■■□□□ 1.28
CDX2Q99626 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC23.02■■□□□ 1.28
CDX2Q99626 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDX2Q99626 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.01■■□□□ 1.27
CDX2Q99626 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDX2Q99626 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDX2Q99626 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDX2Q99626 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.01■■□□□ 1.27
CDX2Q99626 RPPH1-201ENST00000516869 333 ntBASIC23.01■■□□□ 1.27
CDX2Q99626 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.01■■□□□ 1.27
CDX2Q99626 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.01■■□□□ 1.27
CDX2Q99626 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.01■■□□□ 1.27
CDX2Q99626 AC138907.5-202ENST00000569484 235 ntBASIC23.01■■□□□ 1.27
CDX2Q99626 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.01■■□□□ 1.27
CDX2Q99626 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.01■■□□□ 1.27
CDX2Q99626 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.01■■□□□ 1.27
CDX2Q99626 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDX2Q99626 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CDX2Q99626 AC142086.6-201ENST00000621154 1765 ntBASIC23.01■■□□□ 1.27
CDX2Q99626 AC092803.2-201ENST00000564287 1899 ntBASIC23■■□□□ 1.27
CDX2Q99626 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23■■□□□ 1.27
CDX2Q99626 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23■■□□□ 1.27
CDX2Q99626 BX088651.1-201ENST00000540551 451 ntBASIC23■■□□□ 1.27
CDX2Q99626 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23■■□□□ 1.27
CDX2Q99626 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23■■□□□ 1.27
CDX2Q99626 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23■■□□□ 1.27
CDX2Q99626 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23■■□□□ 1.27
CDX2Q99626 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23■■□□□ 1.27
CDX2Q99626 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23■■□□□ 1.27
CDX2Q99626 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDX2Q99626 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.99■■□□□ 1.27
CDX2Q99626 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDX2Q99626 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.99■■□□□ 1.27
CDX2Q99626 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.99■■□□□ 1.27
CDX2Q99626 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.99■■□□□ 1.27
CDX2Q99626 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.99■■□□□ 1.27
CDX2Q99626 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDX2Q99626 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CDX2Q99626 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.98■■□□□ 1.27
CDX2Q99626 ABHD17AP6-201ENST00000458502 1044 ntBASIC22.98■■□□□ 1.27
CDX2Q99626 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.98■■□□□ 1.27
CDX2Q99626 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 AL445228.2-201ENST00000605589 952 ntBASIC22.98■■□□□ 1.27
CDX2Q99626 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CDX2Q99626 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CDX2Q99626 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.97■■□□□ 1.27
CDX2Q99626 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC22.97■■□□□ 1.27
CDX2Q99626 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.97■■□□□ 1.27
CDX2Q99626 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
CDX2Q99626 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
CDX2Q99626 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms